Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq185 98.7 8e-16 >seq185 Length=20677 Score = 98.7 bits (108), Expect = 8e-16 Identities = 380/584 (65%), Gaps = 31/584 (5%) Strand=Plus/Minus Query 43717 TCAA-TATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAG 43775 |||| || || || || ||||||||||||||||| || |||| || || ||||| || | Sbjct 17565 TCAAGTACCACGAGATCTGGCAAATGTACAAAAAGGCCGAGGCCTCTTTCTGGACCGCCG 17506 Query 43776 AAGAAGTTGATTTGACTAAAGA-CTTAGCACATTGGATTGCATTAAAACCACAAGA--AA 43832 | || |||| | | || || ||| ||| || || | | |||| || || || Sbjct 17505 AGGAGATTGACCTTTCCAAGGATCTT--CAC----GACTGGA--ACAACCGCATGACTAA 17454 Query 43833 -----AACATTTTAT-ATCTTTG--GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 |||| || | |||| | ||| | || || || || || ||||| || || Sbjct 17453 GGATGAACAGTTCTTCATCTCTCACGTTCTTGCCTTCTTCGCCGCCTCTGACGGTATTGT 17394 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 || || || ||||| || || | || ||||| | || ||||| || || || Sbjct 17393 TAACGAGAACTTGGTCGAGCGTTTCTCTGCTGAGGTTCAGATCCCTGAAGCCCGTTGCTT 17334 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 || || || || || || || || ||||| ||||| | |||| | | ||||| || Sbjct 17333 CTACGGTTTCCAGATCATGATGGAGAACATTCACTCGGAGACGTACTCTTTGCTGATTGA 17274 Query 44005 TACGTACATCAAAGATGGGCACGAGAAGCATCGAT---TGTTTAATGCGATAGAAAC-AG 44060 || ||||| || || || | ||| || | || || || || || || | Sbjct 17273 CACCTACATTAAGGA---GCCTGCTCAGCGCACATACCTCTTCAACGCCATTGACACTAT 17217 Query 44061 TACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTC-- 44118 | ||||| ||| | || || ||||||||||| || ||||| | | || || || Sbjct 17216 TCCCTGC-ATTCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTACTGACAAGGAGTCGA 17158 Query 44119 -TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGT 44177 ||||| | || ||||| || || || | ||| || || || ||||| || || | | Sbjct 17157 CTTTTGCTCAGCGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTT 17098 Query 44178 TTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237 |||| |||| || ||| | || || ||||||||||| || ||||| || || || | Sbjct 17097 TTGCCTCCATCTTCTGGCTGCGCAAGCGTGGTTTGATGCCCGGTTTGACTTTCTCCAACG 17038 Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || | || ||||||||| || | || |||||||| ||| Sbjct 17037 AGCTTATCTCTCGTGATGAGGGTCTTCACACGGATTTTGCCTGC 16994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454251317805