Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq26 210 3e-49 >seq26 Length=269500 Score = 210 bits (232), Expect = 3e-49 Identities = 936/1467 (64%), Gaps = 43/1467 (3%) Strand=Plus/Minus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||| ||||| | ||||| || || ||||| || || ||||||| || || | || | Sbjct 167722 GGTAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGAAGTTG 167663 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 | || || ||||| || |||| | || ||| |||| ||| |||| ||| || | | Sbjct 167662 ACGCAGTGGGCATGGGCGCCAGGAGCAGCGAGTTGCGAACACCGTTCTGCTTAATCTGCT 167603 Query 110826 CCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 |||| ||| | ||| || | | | | || || | || | |||||||||| ||||| Sbjct 167602 CCTTCAGAGAGTTCCAATCCCACAGGTCA-CTGGGCGTGACAT-CCCACATGTCGAACTG 167545 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 ||| | || || || | ||||| ||||| | || || | ||||| | |||| Sbjct 167544 AAGGATACCCTGAGAGACAGGAGAGCCCTCGTACGTCGAGTAAGTACCTTCAACAGCAGC 167485 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | || || |||||||| | ||||| || ||||| || ||||| | || | Sbjct 167484 GATATCGCATGAAGCCTCCAGAGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAG 167425 Query 111004 CTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCG 111058 || || || | || ||||| |||| || | || || |||| || Sbjct 167424 CTGACGAGCCTCGGCAGACTCAAAAGGCATGCGAAGGGCCAGGAAGG-----CATCGGCC 167370 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 ||||| || ||||| | |||||| || | ||| ||||| || || || || || Sbjct 167369 AGACCCTGGACACCAACACCAATGGGACGGTGACGCATGTTGCTGTTCCGGGCCTCGACA 167310 Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178 || || || || ||||||| ||||| | || | ||||| ||| |||| Sbjct 167309 ACAGGGTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGACAACAACCTTGGTGACA 167250 Query 111179 TCATGAAGTTTTTCATAATCAAA--AGT-GCGAGTCTCTTCATTGACATACTTTGGAAGG 111235 || || || || | | || | ||| | || | ||| ||| | || || Sbjct 167249 TCGTGCAGCTTCTGGAAGTCGTAGCAGTTGTTGGTGTAGTCA---ACAAAGGCAGGGAGA 167193 Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 || | || ||||| ||||| |||||| |||||| | | |||||| | ||| || Sbjct 167192 GCAAGCGACGCCAAGTTGCACACAGCCACCTCATCAGGAGCGCAGTACTCGATAATCTCA 167133 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || | ||||||||| ||| || |||| ||||| ||||||||||| |||||| Sbjct 167132 GTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAG 167073 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 ||||||||| | |||| | || | || ||||||||||| | || |||||||| | | Sbjct 167072 TGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATAGCATAC 167013 Query 111416 CA-AACATCGGCGGCTGGTACAATGG--CGTTGGCC-CGTCCCTCCGCCTCGTACTTTGT 111471 || | | || | | || | |||| | |||| ||||| ||| ||||||||| Sbjct 167012 CACAGCTTCTGAGCCTTG----ATGGTAAGACGGCCACGTCCTTCCCGCTCGTACTTGAC 166957 Query 111472 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 111531 ||| || || ||||| |||||||| || | | || || || || || || Sbjct 166956 GTAAAGAGCCTCAAATTCCTCACCGTAACAATCAGCCAAGCCAGGGCACTCGTTGGGGCA 166897 Query 111532 GAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 111591 | || | ||||| || | |||||| ||||||||||| | || || |||||||| Sbjct 166896 CATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACAG 166837 Query 111592 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651 || || | ||| | | ||| ||| || | ||| ||||| || | ||||| Sbjct 166836 GGCAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAG 166777 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACG 111711 |||||| | | ||| |||||||| ||||| || || | || | || || |||| Sbjct 166776 GAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACC---AGGACG 166720 Query 111712 C------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 | ||| | |||| || || || || ||| || || || || ||||| |||| Sbjct 166719 CTTGTTACCACCCTGATCGACGTAACGAGCAGTGTTATTGAAGACACGCAGCATAGGAAC 166660 Query 111766 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 111825 |||||| | || ||| || || || |||| || | || | | | || Sbjct 166659 AATACCGTTCGAGGTACCGTTGGTGCCGGCAATATAGGAACCGGTAGCACGGATACGGTG 166600 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 || | || ||||| || ||| ||| ||||| ||||| | | || || | Sbjct 166599 AGCGTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATC 166540 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 ||||||||| | ||| ||||||||| || | | | |||||| || | ||| || Sbjct 166539 ATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGG 166480 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGAC 112003 || ||||| || ||||||||||| || | |||||| ||| | | |||| ||| Sbjct 166479 CTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGA--AGAACTTGCTCGAC 166422 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 || | ||| || |||| ||| |||| | || || ||| |||| || || Sbjct 166421 ATGAGATTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAGATACCGACAGCAACA 166362 Query 112064 CGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGAT-AGCT 112122 ||||| | ||||| ||| || || | | ||||||| ||| |||| | || | Sbjct 166361 CGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGAT 166302 Query 112123 CTTCTCAAGGGTTTTGAGACCAAAGTA 112149 ||| || ||||| |||| |||||||| Sbjct 166301 CTT-TCCAGGGTCTTGAATCCAAAGTA 166276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029166005600