Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq26 147 3e-30 seq185 111 2e-19 >seq26 Length=269500 Score = 147 bits (162), Expect = 3e-30 Identities = 839/1335 (63%), Gaps = 23/1335 (2%) Strand=Plus/Minus Query 118143 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGC 118202 |||||||| |||||||| || | || | | | || || || | ||||| ||| Sbjct 167759 TTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTCGAAGTGTAAGGC 167700 Query 118203 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 118262 || |||||||| |||||||||| || |||| || || || ||||||||||| |||| | Sbjct 167699 TCGAAGCACTCGTTGTTACCCAGAATCTGGGAAGTTGACGCAGTGGGCATGGGCGCCAGG 167640 Query 118263 AGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAG 118322 || || ||| || | ||| || | | |||| | ||||| |||| || ||| || | Sbjct 167639 AGCAGCGAGTTGCGAACACCGTTCTGCTTAATCTGCTCCTTCAGAGAGTTCCAATCCCAC 167580 Query 118323 TTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGAT 118382 | | | | | | |||||| || ||||| |||||||| || || | || || Sbjct 167579 AGGTCACTGGGCGTGACATCCCACATGTCGAACTGAAGGATACCCTGAGAGACAGGAGAG 167520 Query 118383 CCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCT 118442 ||||| | ||| || | || ||||| | || | ||| | ||||| || || Sbjct 167519 CCCTCGTACGTCGAGTAAGTACCTTCAACAGCAGCGATATCGCATGAAGCCTCCAGAGCA 167460 Query 118443 GCGTGATACATTGTTTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAATCAAA 118501 ||||| || || || || || || | || | || | |||||| | || ||||| Sbjct 167459 GCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGAC-GAGCCTCGGCAGACTCAAA 167401 Query 118502 CGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCG 118561 | | || | || |||| || ||||| |||||||| | ||||| || || Sbjct 167400 AGGCATGCGAAGGGCCAGGAAGGCATCGGCCAGACCCTGGACACCAACACCAATGGGACG 167341 Query 118562 ATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCT 118621 || | ||| || ||||| || | || || || ||| ||| || | | Sbjct 167340 GTGACGCATGTTGCTGTTCCGGGCCTCGACAACAGGGTAGTGGTTCACATCAATGATACG 167281 Query 118622 ATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAAC---T 118678 || | || | |||||||| |||| || || ||||| | | | || | | | Sbjct 167280 GTTCAAGTTGCGGACAACAACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAGCAGTT 167221 Query 118679 GCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGT 118738 | || | ||| ||| | ||| || || | ||||||| || ||||||| Sbjct 167220 GTTGGTGTAGTCA---ACAAAGGCAGGGAGAGCAAGCGACGCCAAGTTGCACACAGCCAC 167164 Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCC 118798 |||||| | | |||||| ||||| || ||||| | ||| ||||| ||| || || Sbjct 167163 CTCATCAGGAGCGCAGTACTCGATAATCTCAGTGCAAAGGTTGGAACTGCGAATAGTTCC 167104 Query 118799 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCC 118858 || |||||| || || ||| ||| || ||||||||| | |||| | || | || Sbjct 167103 CAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTACC 167044 Query 118859 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGT--GGC 118915 |||||||| || | | |||||||| | ||| | | || | ||| | || | | Sbjct 167043 AGTCTCCGTCTGAGCTTCCAGAATAGCATACCACAGCTTCTG-AGCCTTGATGGTAAGAC 166985 Query 118916 GTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGC 118975 | | | || || || ||||||||| ||| || || ||||| || ||||| Sbjct 166984 G--GCCACGTCCTTCCCGCTCGTACTTGACGTAAAGAGCCTCAAATTCCTCACCGTAACA 166927 Query 118976 CTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAAC 119035 || | | || || || | ||||| | ||| | ||||| || || |||||| Sbjct 166926 ATCAGCCAAGCCAGGGCACTCGTTGGGGCACATGAGGGTCCATTCGCCGTTCTTCTCAAC 166867 Query 119036 CCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTC 119095 ||||||||||| | || |||||||| || || ||| | ||| ||| |||| || Sbjct 166866 ACGCTTCATGAACAAATCGGGGATCCACAGGGCAAGGAACAAATCGCGAGCGCGAATCTC 166807 Query 119096 TTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTC 119155 || | || || || || | || | || || | | ||| ||||||||||| || Sbjct 166806 CTCCTTACCGTGGTTCTTCCGGAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGCTC 166747 Query 119156 CAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGC 119209 |||||| | || | | || | |||| |||| |||| | || || | || Sbjct 166746 CAGGTAAATGGCAAAAGCACC---AGGACGCTTGTTACCACCCTGATCGACGTAACGAGC 166690 Query 119210 AGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCG 119269 |||| || || ||||| ||||| |||| ||||| | || || || || || Sbjct 166689 AGTGTTATTGAAGACACGCAGCATAGGAACAATACCGTTCGAGGTACCGTTGGTGCCGGC 166630 Query 119270 AATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTT 119329 |||| || | || | || | ||| || | ||| ||||| || ||| ||| Sbjct 166629 AATATAGGAACCGGTAGCACGGATACGGTGAGCGTTGAGACCGATACCACCCGCCATCTT 166570 Query 119330 TGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATT 119389 ||||| || || | |||| | | ||||| || ||||| ||| |||| | Sbjct 166569 GGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCTTCGATACTGTCCTCCTTCAT 166510 Query 119390 TGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGG 119449 | | | ||||||| || | |||||| || ||||| ||||||||||| || || Sbjct 166509 GTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGG 166450 Query 119450 TGTCGCGTGGATGAA 119464 | ||||| |||| Sbjct 166449 AGAGGCGTGAGTGAA 166435 >seq185 Length=20677 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| ||| ||| |||||||| ||||| ||||| || || || ||||| || ||| Sbjct 16997 GGCAAAATCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACC 17056 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||| | ||| ||||| || |||||| || | ||| | |||||||||||||| Sbjct 17057 GGGCATCAAACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCAGAGAAGAAGAT 17116 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAA 130193 ||||| ||| ||||| |||| ||||||| |||||| | || | |||| | || Sbjct 17117 ACCCTCAACAGCGGCGAAGGCAACAAGACGCTGAGCAAAAG-TCGACTCCTTGTCAGTAA 17175 Query 130194 ACCACTTCATCGCCCACTGCGCCTT 130218 |||||||| ||||| | ||||| Sbjct 17176 TCCACTTCAGGGCCCAGTCGGCCTT 17200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432409311160