Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq26 215 6e-51 seq185 122 1e-22 >seq26 Length=269500 Score = 215 bits (238), Expect = 6e-51 Identities = 895/1396 (64%), Gaps = 37/1396 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | ||||| || || ||||||| || || | |||| ||| Sbjct 166342 CCTCAGCACATGATTATGCGTGTTGCTGTCGGTATCTGGGGTGATAATGTTGAGCGTGTT 166401 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 |||| || ||| | ||||| |||| | | ||| |||||| | || ||||||| Sbjct 166402 CTGGAAACTTACAATCTCATGTCGAGCAAGTTCT--TCACTCACGCCTCTCCTACCCTCT 166459 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || ||||| || || || | || |||||| | | | || ||||||| Sbjct 166460 TCAACGCCGGTACCCCTCAGCCTCAGCTTTCTTCCTGCTTCTTGGTAGACATGAAGGAGG 166519 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || ||| | |||||||||| || || | | ||||| ||||| ||| ||| | Sbjct 166520 ACAGTATCGAAGGTATCTATGATACCCTCAAGACCTGTGCTATGATCTCCAAGATGGCGG 166579 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | ||||| || | || || | | | || | || |||| || || | Sbjct 166580 GTGGTATCGGTCTCAACGCTCACCGTATCCGTGCTACCGGTTCCTATATTGCCGGCACCA 166639 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| || | |||||| |||| ||||| || || || || ||| || || || | Sbjct 166640 ACGGTACCTCGAACGGTATTGTTCCTATGCTGCGTGTCTTCAATAACACTGCTCGTTACG 166699 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | |||| | ||| ||||| || || | || | || || ||||| |||| Sbjct 166700 TCGATCAGGGTGGTAACAAGCGTCCT---GGTGCTTTTGCCATTTACCTGGAGCCGTGGC 166756 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG--GCGCG 104691 |||| ||| | | ||||||||||| | || ||||| ||| | |||||| |||| Sbjct 166757 ACGCTGATGTGTTTGAGTTCCTTGACCTCCGGAAGAACCACGGTAAGGAGGAGATTCGCG 166816 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 | |||||| | ||| || || ||||| || ||| | ||||||||| | |||||| | Sbjct 166817 CT--CGCGATTTGTTCCTTGCCCTGTGGATCCCCGATTTGTTCATGAAGCGTGTTGAGAA 166874 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 || ||| | ||| | ||| | || || || || ||||| | | ||| || Sbjct 166875 GAACGGCGAATGGACCCTCATGTGCCCCAACGAGTGCCCTGGCTTGGCTGATTGTTACGG 166934 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC--GGGCGACTGCGACG 104869 |||||| ||||| || |||||| ||||||||| ||||| | || || || || Sbjct 166935 TGAGGAATTTGAGGCTCTTTACGTCAAGTACGAGCGGGAAGGACGTGGCCGTCT--TACC 166992 Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 | | || | || | ||||| | |||||||| | |||| || |||||||||| || Sbjct 166993 AT-CAAGGCTCAGAAGCTGTGGTATGCTATTCTGGAAGCTCAGACGGAGACTGGTAACCC 167051 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | |||| | ||||| || ||| |||| |||||||| || ||||| |||| || Sbjct 167052 TTTCATGTTGTACAAGGATCACTGCAACCGCAAGAGTAACCAGAAGAACCTGGGAACTAT 167111 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 |||||||| || || || || || | || | | |||||| |||||| Sbjct 167112 TCGCAGTTCCAACCTTTGCACTGAGATTATCGAGTACTGCGCTCCTGATGAGGTGGCTGT 167171 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 105107 ||| ||| | || || | |||||||| | ||| || | || |||| | | | Sbjct 167172 GTGCAACTTGGCGTCGCTTGCTCTCCCTGCCTTTGTTGACTACACCAACAACTGC-TACG 167230 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | | || || ||||| || || || ||| | ||| | ||| | | |||| Sbjct 167231 ACTTCCAGAAGCTGCACGATGTCACCAAGGTTGTTGTCCGCAACTTGAACCGTATCATTG 167290 Query 105168 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 || || ||||| |||| || || || || ||| | |||||||| |||| Sbjct 167291 ATGTGAACCACTACCCTGTTGTCGAGGCCCGGAACAGCAACATGCGTCACCGTCCCATTG 167350 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287 || | ||||| |||||||| || |||| ||| | |||| | ||||| || | Sbjct 167351 GTGTTGGTGTCCAGGGTCTGGCCGATGCCTTCCTGGCCCTTCGCATGCCTTTTGAGTCTG 167410 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 ||| || | |||| || || || |||||||| || ||||| ||||| |||| Sbjct 167411 CCGAGGCTCGTCAGCTCAACAAGCAGATCTTCGAGACCATTTACCACGCTGCTCTGGAGG 167470 Query 105348 CGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 105404 | |||| || | || | ||||| ||| | || || | ||||| ||||| | Sbjct 167471 C---TTCATGCGATATCGCTGCTGTTGAAGGTACTTACTCGACGTACGAGGGCTCTCCTG 167527 Query 105405 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCAC---TACG 105461 || || || | ||||| || || ||||||| | || | || || | || | | Sbjct 167528 TCTCTCAGGGTATCCTTCAGTTCGACATGTGGG-ATGTCACGCCCAG--TGACCTGTGGG 167584 Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 | ||| | |||| ||||| | || ||| |||| ||| |||| ||| || ||| ||| Sbjct 167585 ATTGGAACTCTCTGAAGGAGCAGATTAAGCAGAACGGTGTTCGCAACTCGCTGCTCCTGG 167644 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 | || ||||| || || || || | || || ||||||| || || ||||| || || | Sbjct 167645 CGCCCATGCCCACTGCGTCAACTTCCCAGATTCTGGGTAACAACGAGTGCTTCGAGCCTT 167704 Query 105582 ACACGACGAACATCTA 105597 |||| ||||||| || Sbjct 167705 ACACTTCGAACATTTA 167720 >seq185 Length=20677 Score = 122 bits (134), Expect = 1e-22 Identities = 257/375 (69%), Gaps = 10/375 (3%) Strand=Plus/Minus Query 94586 CTGATGAGGTGCA-ATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGTGTCATAATGAA 94644 ||| |||||| || |||| ||||||| | | |||||| | | ||| |||| ||| | Sbjct 17367 CTGCTGAGGTTCAGATCC-CTGAAGCCCGTTGCTTCTACGGTTTCCAGA-TCATGATGGA 17310 Query 94645 -ATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGA 94703 | | || |||||| ||| | || || |||| || |||||||| |||| | Sbjct 17309 GAACATTCACTCGGAGACGTACTCTTTGCTGATTGACACCTACATTAAGGAGCCTGCTCA 17250 Query 94704 GAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTG 94763 | | | ||||| | ||||| | || |||| || |||| || || || || Sbjct 17249 GCGCACATACCTCTTCAACGCCATTGACACTATTCCCTGCATTCGCCGCAAGGCCGACTG 17190 Query 94764 GGCTATGAAGTGGTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATT 94820 ||| |||||||| || | |||| ||||| || ||||| |||| || | || || Sbjct 17189 GGCCCTGAAGTGGATTACTGACAAGGAGTCGACTT---TTGCTCAGCGTCTTGTTGCCTT 17133 Query 94821 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 94880 || ||||||||||||||||||||||||| | || | | || | ||||| || Sbjct 17132 CGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCCATCTTCTGGCTGCGCAA 17073 Query 94881 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 94940 ||| ||| | ||||| ||| | |||||||||||||||||||||||||| ||||| || Sbjct 17072 GCGTGGTTTGATGCCCGGTTTGACTTTCTCCAACGAGCTTATCTCTCGTGATGAGGGTCT 17013 Query 94941 CCACCAAGAGTTTGC 94955 ||| || ||||| Sbjct 17012 TCACACGGATTTTGC 16998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258168035640