Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq44 159 1e-33 seq9 123 8e-23 seq68 95.1 4e-14 seq33 95.1 4e-14 >seq44 Length=213652 Score = 159 bits (176), Expect = 1e-33 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | |||||||| ||||| || ||||| |||||||| || || || Sbjct 152224 CATACCACCACGCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTC 152283 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || || ||||| || || || || ||||| || || Sbjct 152284 CGAGAGCGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGG 152343 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || |||||||| || | || ||||| ||||| | ||| || | || Sbjct 152344 GGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATGGTATCCGACGACTC 152403 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| |||| ||||| ||||| || || || || ||||||||||| Sbjct 152404 GACCTCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 152454 Score = 150 bits (166), Expect = 5e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || ||||||||||| || ||||| || || || Sbjct 152452 CATACCACCACGAAGGCGGAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTC 152511 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||||||||| || || ||||||||||| ||||| ||||| || || Sbjct 152512 GGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGG 152571 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || | || || || || || | ||||| | || Sbjct 152572 GGGAATACCCTCCTTGTCCTGGATCTTTGACTTGACGTTGTCGATAGTGTCAGAGGACTC 152631 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| || || || || || || ||||||||||| Sbjct 152632 AACCTCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAAATCTGCAT 152682 Score = 122 bits (134), Expect = 3e-22 Identities = 170/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| |||||||| | | ||||| || || ||||| ||||| || || || || | Sbjct 151992 TTTACTGGCCACCACGAAGACGGAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGT 152051 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || || || || || || || || ||||||||||| ||||| ||||| | Sbjct 152052 AGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGT 152111 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | || || || || || || ||||| || || ||| || || || || || | ||| || Sbjct 152112 CCGGGGGGATACCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATGGTATCGGAA 152170 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || | ||||||||||| || || || || || |||||||| Sbjct 152171 GACTCGACCTCGAGAGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 152226 Score = 116 bits (128), Expect = 1e-20 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||||||||| || ||||| || || || Sbjct 152680 CATACCACCACGAAGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTC 152739 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || || ||||| || || || || ||||| || || Sbjct 152740 GGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGG 152799 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || ||||| ||||| | ||| || | || Sbjct 152800 GGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTC 152859 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| || || || | ||||| ||||| Sbjct 152860 AACCTCGAGGGTGATGGTCTTGCCGGT 152886 >seq9 Length=407631 Score = 123 bits (136), Expect = 8e-23 Identities = 263/390 (67%), Gaps = 2/390 (1%) Strand=Plus/Plus Query 349493 ATTGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAAT 349551 || |||||||| | || ||||| || || || || ||||| || ||||| || || Sbjct 286326 ATCGAGGTTGAGTTCAAGGGTGAGACCAAGACC-TTCACCCCCGAGGAGATTTCCTCCAT 286384 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGC 349611 ||| | | || ||| || | |||||| | || | ||| || || | | || Sbjct 286385 GGTCCTGATCAAGATGCGTGAGACTGCTGAGTCCTACCTCGGTACCACCGTCAACCAGGC 286444 Query 349612 TGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGG 349671 || | ||||| || ||||| || || || | |||||| || || || |||||||| Sbjct 286445 CGTCGTCACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCTGG 286504 Query 349672 CAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGC 349731 ||||| || | || ||||| | || || || || || |||||||| || || || Sbjct 286505 TTTGATTGCTGGTCTTAACGTTCTCCGTATCATCAACGAGCCTACTGCTGCTGCCATCGC 286564 Query 349732 ATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGG 349791 || || ||||| || | | ||| || || | || || || ||| | ||||| Sbjct 286565 CTACGGTCTTGACAAGAAGGTCGACGGTGAGCGCAACGTCCTGATCTTCGATCTTGGTGG 286624 Query 349792 TGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAAC 349851 ||||||||| ||||| || || || || |||| || || || || || || || | || Sbjct 286625 TGGTACTTTCGATGTTTCCCTCCTTACCATTGAGGATGGTATCTTCGAGGTCAAGTCCAC 286684 Query 349852 TGCTGGTGATACACATCTTGGTGGAGAAGA 349881 ||||||||| || || |||||||| ||||| Sbjct 286685 TGCTGGTGACACTCACCTTGGTGGTGAAGA 286714 >seq68 Length=156602 Score = 95.1 bits (104), Expect = 4e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 123673 ATACCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCC 123732 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || ||||| ||||| || || ||||| ||||| || || || || || || Sbjct 123733 GACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGG 123792 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 ||||| || || || ||||| || || | || || || || || | || || | || Sbjct 123793 GGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCG 123852 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || || || || | ||||| || || || || || || ||| Sbjct 123853 ACCTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAAA 123894 >seq33 Length=249776 Score = 95.1 bits (104), Expect = 4e-14 Identities = 146/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 140534 ATGAAGAGTAGACT--CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 ||| ||||| |||| | || || || || || ||||| | || || ||||| || || Sbjct 209259 ATGGAGAGT-GACTAACCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGC 209201 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || ||||| || || || || ||||| || || ||||| || || || ||||| || Sbjct 209200 TGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATC 209141 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || | || || || || |||| || || | || || ||||| || | ||||| || Sbjct 209140 TTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCC 209081 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || ||||||||||| Sbjct 209080 GTAAGGGTCTTAACGAAAATCTGCAT 209055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515247391474883