Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq26 242 4e-59 seq32 134 2e-26 seq185 100 3e-16 >seq26 Length=269500 Score = 242 bits (268), Expect = 4e-59 Identities = 369/519 (71%), Gaps = 6/519 (1%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| ||| || |||||| | || ||||| |||||||| ||||| ||| |||||| | Sbjct 166429 AAGTTCTTCACTCACGCCTCTCCTACCCTCTTCAACGCCGGTACCCCTCAGCCTCAGCTT 166488 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || ||||||| |||| | |||||||| ||| ||||| || ||||| || || ||| Sbjct 166489 TCTTCCTGCTTCTTGGTAGACATGAAGGAGGACAGTATCGAAGGTATCTATGATACCCTC 166548 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGT- 53445 ||| ||||| ||||||||| | |||||||||||||| || || |||| | ||| Sbjct 166549 AAGACCTGTGCTATGATCTCCAAGATGGCGGGTGGTATCGGTCTCAAC-GCTC-ACCGTA 166606 Query 53446 -CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504 |||||| | ||| | || || || ||||| | | | || || || |||| Sbjct 166607 TCCGTGCTACCGGTTCCTATATTGCCGGCACCAACGGTACCTCGAACGGTATTGTTCCTA 166666 Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGG 53564 |||| || |||||||| ||||| || || |||||| | ||||||||| ||||| | Sbjct 166667 TGCTGCGTGTCTTCAATAACACTGCTCGTTACGTCGATCAGGGTGGTAACAAGCGTCCTG 166726 Query 53565 GGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624 | | || ||||| ||||| |||||||||||||| || | | ||||| || || || | Sbjct 166727 GTGCTTTTGCCATTTACCTGGAGCCGTGGCACGCTGATGTGTTTGAGTTCCTTGACCTCC 166786 Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTC 53684 | ||| || ||| | || ||||| ||| || || |||| || |||||||| | Sbjct 166787 GGAAGAACCACGGTAAGGAGGAGATTCGCGCTCGCGATTTGTTCCTTGCCCTGTGGATCC 166846 Query 53685 CGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACG 53744 | || | |||||| | || |||||| ||| || ||| ||| |||||||| |||| Sbjct 166847 CCGATTTGTTCATGAAGCGTGTTGAGAAGAACGGCGAATGGACCCTCATGTGCCCCAACG 166906 Query 53745 AGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTT 53782 ||||||| ||| | | | ||| ||||||||||| ||| Sbjct 166907 AGTGCCCTGGCTTGGCTGATTGT-TACGGTGAGGAATTT 166944 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 55744 GACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTA 55803 ||| || ||||||||| | ||| | | | || | ||| |||||| |||||||| | Sbjct 167889 GACTGTTTGGGAGATTTCTCAGCGTACTGTTGTTCAGATGGCTGCTGACCGTGGTGCCTT 167948 Query 55804 CATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAG 55863 || || ||||| ||||| ||||||| |||| || | || | ||| |||| | | Sbjct 167949 TATTGATCAGTCTCAGTCGTTGAACATTCACATGAAGGACCCAACTATGGGCAAGATTAC 168008 Query 55864 CTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 | ||||||||| || |||||| || |||||||||||||||||||||||||| || Sbjct 168009 CAGCATGCACTTTGCGGGTTGGAAGCTTGGTCTCAAGACGGGTATGTACTATCTGCGTAC 168068 Query 55924 CC 55925 || Sbjct 168069 CC 168070 >seq32 Length=251022 Score = 134 bits (148), Expect = 2e-26 Identities = 196/275 (71%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 || |||||| ||| ||||||| |||||||| |||||||||||||| | |||| Sbjct 78871 AGACGAGTGTGAATATAACGAGCCGAGGCAGCATCTGAACCACCAGCAAGACGAGAACCG 78930 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || | ||||| || |||| | || | |||||| | || ||||||| ||||| | Sbjct 78931 AAGTTACCACTGGGTTCCAGGCAATTGACGTTGTTAGAACCGACAAAGTCCTGAGCAAGA 78990 Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478 | |||||| || ||| || ||||| || || |||| |||||| | | || Sbjct 78991 CCAATAATCGTCTGCTGCAGGGAAGCTTCACCGTGTTGGTACGACGTCTGACCAGAAACA 79050 Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536 || || |||| || | | ||||||||||| |||| || ||| |||||| || |||| Sbjct 79051 TAACCAGCCAACTCAACAACCTTCATGTCCTTGAC--CACGTTACTCTTGAAACAAGCAT 79108 Query 117537 AAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | || ||||||||||||| |||||||| |||||| Sbjct 79109 ACATGACCTTGCGCTGACCCGGCTTCAGTCCATCC 79143 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 152049 GGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTT 152108 ||| ||||| ||||| || || || | || || | ||| ||| || ||| || Sbjct 78897 GGCAGCATCTGAACCACCAGCAAGACGAGAACCGAAGTTACCACTGGGTTCCAGGCAATT 78956 Query 152109 GAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGC 152168 || |||||| | || || || | |||||| | | | |||||| |||||| || Sbjct 78957 GACGTTGTTAGAACCGACAAAGTCCTGAGCAAGACCAATAATCGTCTGCTGCAGGGAAGC 79016 Query 152169 TTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCAT 152228 ||||||||| || |||| |||||| | | | || || ||||||| | |||||||| Sbjct 79017 TTCACCGTGTTGGTACGACGTCTGACCAGAAACATAACCAGCCAACTCAACAACCTTCAT 79076 Query 152229 GTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276 |||| | || ||| |||||| ||| || || || ||||||||||| Sbjct 79077 GTCCTTGACCACGTTACTCTTGAAACAAGCATACATGACCTTGCGCTG 79124 >seq185 Length=20677 Score = 100 bits (110), Expect = 3e-16 Identities = 336/519 (65%), Gaps = 8/519 (2%) Strand=Plus/Plus Query 74808 CCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAG 74867 || ||||| | |||||||| || ||| ||||||| || | |||| ||||||| Sbjct 17055 CCGGGCATCAAACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCAGAGAAGAAG 17114 Query 74868 ATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATC---GGAAGTC 74924 || || || ||| || ||||| ||||| || || || || | | || | ||| Sbjct 17115 ATACCCTCAACAGCGGCGAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTA 17174 Query 74925 ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGAC-AGTATCGATCGCTTG 74983 ||||| || | ||||| || || || || || ||||||| ||| || || || | Sbjct 17175 ATCCACTTCAGGGCCCAGTCGGCCTTGCGGC-GAATGCAGGGAATAGTGTCAATGGCGTT 17233 Query 74984 GAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGT 75043 ||||||| || || | || ||||| | | ||||||||| | |||||||| Sbjct 17234 GAAGAGGTATGTGCGCTGAGCAGGCTCCTTAATGTAGGTGTCAATCAGCAAAGAGTACGT 17293 Query 75044 CTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAAT 75103 |||||| ||||| ||| | | |||| | ||||||| | || || || | || Sbjct 17294 CTCCGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGGGCTTCAGGGAT 17353 Query 75104 CTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGC 75163 ||| || || || ||| | | | | ||||| | || || ||||| |||||||| Sbjct 17354 CTGAACCTCAGCAGAGAAACGCTCGACCAAGTTCTCGTTAACAATACCGTCAGAGGCGGC 17413 Query 75164 GAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAG---TGAGTTTGTCCCA 75220 ||| || || || || ||| ||| | ||||| | || || | |||| ||| Sbjct 17414 GAAGAAGGCAAGAACGTGAGAGATGAAGAACTGTTCATCCTTAGTCATGCGGTTGTTCCA 17473 Query 75221 ATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTT 75280 || | || ||| | | |||||||||||| | ||||||||| | ||||| Sbjct 17474 GTCGTGAAGATCCTTGGAAAGGTCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTT 17533 Query 75281 TTTGTACAAAGACCACAAGTCAGGGTAATTGATTGGAAA 75319 |||||||| ||| | || |||| ||||| || || Sbjct 17534 TTTGTACATTTGCCAGATCTCGTGGTACTTGATAGGGAA 17572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213530687800