Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq26 257 2e-63 seq44 197 2e-45 seq68 145 9e-30 seq33 132 5e-26 >seq26 Length=269500 Score = 257 bits (284), Expect = 2e-63 Identities = 908/1402 (65%), Gaps = 40/1402 (3%) Strand=Plus/Minus Query 80374 CGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGA 80433 || ||| | || | ||| | |||||||||||| || ||||||||| || || ||||| Sbjct 167729 CGGCGCTGGTAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGG 167670 Query 80434 GCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTG 80493 | || ||| || ||||| || | | | ||| || || || | |||| || ||| Sbjct 167669 GAAGTTGACGCAGTGGGCATGGGCGCCAGGAGCAGCGAGTTGCGAACACCGTTCTGCTTA 167610 Query 80494 ATATCCTCGCGCAAATCTGACCAAAAATCAACCCCAA--CGCTG----TGAC--CCCACA 80545 || | ||| || | |||| || || || | ||| |||| |||||| Sbjct 167609 ATCTGCTCCTTCAGAGAGTTCCAA---TC--CCACAGGTCACTGGGCGTGACATCCCACA 167555 Query 80546 TGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCT 80605 ||||| ||| | ||| |||| || | ||||| ||| || ||||| ||| | || | Sbjct 167554 TGTCGAACTGAAGGATACCCTGAGAGACAGGAGAGCCCTCGTACGTCGAGTAAGTACCTT 167495 Query 80606 CCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGC 80665 | || | || || || || || || ||||| |||||| ||| |||| Sbjct 167494 CAACAGCAGCGATATCGCATGAAGCCTCCAGAGCAGCGTGGTAAATGGTCTCGAAGATCT 167435 Query 80666 CCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGT 80725 |||||| | || |||| | || || | || || | || ||| | | Sbjct 167434 GCTTGTTGAGCTGACGAGCCTCGGCAGACTCAAAAGGCATGCGAAGGGCCAGGAAGGCAT 167375 Query 80726 CAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTC--GGC 80783 | ||||| ||||| || || | | || || ||||| ||| |||| | | | || ||| Sbjct 167374 CGGCCAGACCCTGGACACCAACACCAATGGGACGGTGACGCATGTT-GCT-GTTCCGGGC 167317 Query 80784 CTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCG 80843 ||| || ||||| ||| ||| |||| ||||||| |||||| ||||||| Sbjct 167316 CTCGACAACAGGGTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGACAACAACCTT 167257 Query 80844 TGTAACATCATGAAGTTTCTGAAAGTCGAAT---TGGTTCCCCT--TCA-CAAATGCCGG 80897 || ||||| || || ||||| |||||| | | ||| | ||| |||| || || Sbjct 167256 GGTGACATCGTGCAGCTTCTGGAAGTCGTAGCAGTTGTTGGTGTAGTCAACAAAGGCAGG 167197 Query 80898 AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGAT 80957 || || ||||||| |||||||| |||||||| |||| | | |||||| || Sbjct 167196 GAGAGCAAGCGACGCCAAGTTGCACACAGCCACCTCATCAGGAGCGCAGTACTCGATAAT 167137 Query 80958 TTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTT 81017 || ||||| | || ||| ||| || |||||||| |||||||| |||| ||| Sbjct 167136 CTCAGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTT 167077 Query 81018 GCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGC 81077 ||| |||||||| ||||| | ||| |||| ||||| ||| | | || || || Sbjct 167076 GCAGTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATAGC 167017 Query 81078 GTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGC 81137 | ||| | || | ||||||| ||| ||||| | | |||||| | Sbjct 167016 ATACCACAGCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCCCGCTCGTACTTGAC 166957 Query 81138 GTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCA 81197 |||| | || || | |||||| | |||| | | | ||||||||||| ||||| Sbjct 166956 GTAAAGAGCCTCAAATTCCTCACCGTAACAATCAGCCAAGCCAGGGCACTCGTTGGGGCA 166897 Query 81198 CATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAG 81257 ||| ||| ||| ||| || ||||| ||| ||||||||| || |||||||| || Sbjct 166896 CATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACAG 166837 Query 81258 GGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCG 81315 ||| ||||| ||||| |||||| |||||| | ||| ||||| || | || Sbjct 166836 GGCAAGGAACAAATCGCG--AGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCA 166779 Query 81316 AGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCC 81369 || || || | | || || ||||| |||||||| || | ||| | | || | | Sbjct 166778 AGGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGC 166719 Query 81370 TTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGG 81429 ||| | |||||||| | ||||||||| ||||| || || ||||||| |||||| Sbjct 166718 TTGTTA---CCACCCTGATCGACGTAACGAGCAGTGTTATTGAAGACACGCAGCATAGGA 166662 Query 81430 ATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCT 81487 | ||||| | || |||||| || || | ||| || || | || || || Sbjct 166661 ACAATACCGTTCGAGGTACCGTTGGTGCCGGCAATATAGGAACCGGTAGCACGGATACGG 166602 Query 81488 TGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGG 81547 || ||| |||||||| ||||| | | ||| || ||| |||||| || | || Sbjct 166601 TGAGCGTTG--AGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGG 166544 Query 81548 TCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCT 81607 | ||||| || || ||||| || || | |||||||| | |||||| ||| || | || Sbjct 166543 TATCATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCT 166484 Query 81608 GAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTG 81667 |||| | ||||| ||||| || || || | |||||| |||| | | | | Sbjct 166483 GAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCG 166424 Query 81668 ACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTA 81727 |||| || | || |||||| || || || || ||||| ||||||| ||| | Sbjct 166423 ACATGAGATTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAGATACCGACAGCAA 166364 Query 81728 CACGCATAAACATGTACTGGGG 81749 ||||||||| ||||| ||| || Sbjct 166363 CACGCATAATCATGTGCTGAGG 166342 >seq44 Length=213652 Score = 197 bits (218), Expect = 2e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||||||||| ||||| |||||||| ||||| Sbjct 152454 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTTGAGGTCGAGTCGTCG 152395 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||| | || ||||||||||||||||| ||||| || |||||| Sbjct 152394 GATACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAG 152335 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| ||||||||||| || ||||||| ||||| || | ||||| || Sbjct 152334 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGTACGCTCTCGGACTACAAC 152275 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||||| ||||| || || | ||||| || ||||| Sbjct 152274 ATTCAAAAGGAGTCCACCCTTCACCTTGTTCTCCGTCTGCGTGGTGG 152228 Score = 176 bits (194), Expect = 5e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||| ||||| || ||||| ||||| ||||| Sbjct 152226 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACTCTCGAGGTCGAGTCTTCC 152167 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| || || |||||||||||||| || || || |||||| Sbjct 152166 GATACCATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 152107 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||||||||| || ||||| | |||||||| | ||||| || Sbjct 152106 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACAAC 152047 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| |||||||| || || || | |||||||| ||||| || Sbjct 152046 ATCCAGAAGGAGTCCACTCTCCACCTGGTTCTCCGTCTTCGTGGTGGCCA 151997 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || |||||||| || ||||| ||||||||||| | Sbjct 152682 ATGCAGATTTTCGTCAAGACTCTGACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCT 152623 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || |||||||||||||| ||||| || |||||| Sbjct 152622 GACACTATCGACAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 152563 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 152562 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 152503 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||| || || ||| | || ||||| ||||| Sbjct 152502 ATTCAGAAGGAGTCTACTCTCCACCTTGTCCTCCGCCTTCGTGGTGG 152456 Score = 159 bits (176), Expect = 4e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || ||||||||||| |||| ||||| ||| | ||| | Sbjct 152886 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGATACCATTGACAATGTCAAGTCC 152827 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || ||||||||||| || ||||| ||||| ||| Sbjct 152826 AAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCCTGATTTTCGCTGGCAAG 152767 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| ||| ||||| | ||||| || | || ||||| || ||||| || Sbjct 152766 CAGCTTGAGGATGGTCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCTACTCTCCAC 152707 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || ||||| ||||| Sbjct 152706 CTCGTCCTCCGCCTTCGTGGTGG 152684 >seq68 Length=156602 Score = 145 bits (160), Expect = 9e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| || || || ||||| || || || ||||| ||||| || | ||| Sbjct 123893 TTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCTTCGGACACCATC 123834 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | || | ||| | || || |||||||||||||| ||||| || ||||| ||||| || Sbjct 123833 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAACAGCGCCTG 123774 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||| ||||| || ||||||| || ||||| | ||||| || |||| ||| Sbjct 123773 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAAG 123714 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||||||| || || ||| | ||||| || ||||| Sbjct 123713 GAGTCCACTCTCCACCTGGTCCTCCGTCTCCGTGGTGG 123676 >seq33 Length=249776 Score = 132 bits (146), Expect = 5e-26 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| ||||| || ||||| || || |||||||| ||||| Sbjct 209055 ATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCTTCG 209114 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || |||||||||||||| ||||| || |||||| Sbjct 209115 GACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 209174 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| ||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 209175 CAGCGCCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTACAAC 209234 Query 27586 GTCCAAAAGG-AATCCACTCTTCAT 27609 |||| |||| | |||||| ||| Sbjct 209235 ATCCAGAAGGTTAGTCACTCTCCAT 209259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307826474320