Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq44 113 4e-20 >seq44 Length=213652 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | ||||| ||||| || || |||| Sbjct 152454 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTTGAGGTCGAGTCGTCG 152395 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || ||||| ||||| || || || || || || || Sbjct 152394 GATACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAG 152335 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| || || || | || || | || | || || |||||| Sbjct 152334 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGTACGCTCTCGGACTACAAC 152275 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| ||| | || | ||| | ||| |||| ||||| || Sbjct 152274 ATTCAAAAGGAGTCCACCCTTCACCTTGTTCTCCGTCTGCGTGGTGGTAT 152225 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || |||||||| |||||| | || ||||| || || || | || Sbjct 152682 ATGCAGATTTTCGTCAAGACTCTGACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCT 152623 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||| || || ||||| || || || || || || || Sbjct 152622 GACACTATCGACAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 152563 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || | ||||| | ||| | ||||| |||||| Sbjct 152562 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 152503 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||| |||||||| || Sbjct 152502 ATTCAGAAGGAGTCTAC 152486 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||||||||| ||| | || ||||| || || || | ||| Sbjct 152226 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACTCTCGAGGTCGAGTCTTCC 152167 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| || || || ||||| || || || || || || || Sbjct 152166 GATACCATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 152107 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || |||| ||| | ||| | || || |||||| Sbjct 152106 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACAAC 152047 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||| || | || ||||| | ||| | || |||||| Sbjct 152046 ATCCAGAAGGAGTCCACTCTCCACCTGGTTCTCCGTCTTCGTGGTGGC 151999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916437430720