Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq44 203 8e-47 seq68 181 2e-40 seq33 158 3e-33 >seq44 Length=213652 Score = 203 bits (224), Expect = 8e-47 Identities = 178/222 (80%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||||||||| ||||| ||||| || || ||||| || || | ||||| Sbjct 152461 ACGAAGGCGGAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGT 152520 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| ||||||||||| || |||||||| || || ||||| || |||| || Sbjct 152521 GCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGGGGAATACC 152580 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || ||||| ||||| ||||||||| ||||||||||| Sbjct 152581 CTCCTTGTCCTGGATCTTTGACTTGACGTTGTCGATAGTGTCAGAGGACTCAACCTCGAG 152640 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || || |||||||| || || | |||||| Sbjct 152641 AGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAAATCTGCAT 152682 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||| ||||||||||| || |||||||| || || | ||||| Sbjct 152005 ACGAAGACGGAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 152064 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || ||||||||||| || || |||||||| || || ||||| || || | || Sbjct 152065 ACGGCCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGGATACC 152124 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||||| |||||||| || || || |||||||| Sbjct 152125 CTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCGGAAGACTCGACCTCGAG 152184 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| |||||||| || |||||||| || || | |||||| Sbjct 152185 AGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 152226 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||| ||||| ||||| || || ||||| || || | ||||| Sbjct 152689 ACGAAGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGT 152748 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| ||||| || ||||| || ||||| || || | || Sbjct 152749 GCGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACC 152808 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || || || || ||||| || ||| ||||||||||| Sbjct 152809 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAACCTCGAG 152868 Query 211073 AGTGATCGTCTTTCCCGTGA 211092 ||||| ||||| || |||| Sbjct 152869 GGTGATGGTCTTGCCGGTGA 152888 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| |||||||| ||||| ||||| || |||| || || | ||||| Sbjct 152243 AGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGAGAGCGTACGGCCATCC 152302 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||| || ||||| || ||||| || |||| || ||||||||| Sbjct 152303 TCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCC 152362 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || || ||||| || || || ||||| || || || ||| Sbjct 152363 TGAATCTTCGACTTGACATTGTCAATGGTATCCGACGACTCGACCTCAAGGGTAATGGTC 152422 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 152423 TTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 152454 >seq68 Length=156602 Score = 181 bits (200), Expect = 2e-40 Identities = 162/203 (80%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || |||| ||||| | ||||| Sbjct 123691 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 123750 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| |||||||| || |||| || ||||||||| Sbjct 123751 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCC 123810 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || ||||| || ||||| ||| Sbjct 123811 TGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTC 123870 Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| || ||||| || || Sbjct 123871 TTACCCGTCAGGGTCTTGACGAA 123893 >seq33 Length=249776 Score = 158 bits (174), Expect = 3e-33 Identities = 161/208 (77%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACT--CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCT 210969 || |||||| ||| | || |||||||| || || | |||||| | ||||| ||||||| Sbjct 209258 TGGAGAGTG-ACTAACCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCT 209200 Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 ||||||| ||||| || ||||| || ||||| || |||| || |||||||||||||||| Sbjct 209199 GCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCT 209140 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 | || ||||| ||||| ||||| || || ||||| || ||||||||||| |||| Sbjct 209139 TGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCG 209080 Query 211090 TGAGAGTCTTTACAAACACCTGCATTTT 211117 | || ||||| || || | |||||| || Sbjct 209079 TAAGGGTCTTAACGAAAATCTGCATCTT 209052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159146638559765