Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq26 214 3e-50 >seq26 Length=269500 Score = 214 bits (236), Expect = 3e-50 Identities = 1179/1853 (64%), Gaps = 60/1853 (3%) Strand=Plus/Minus Query 75373 CAAC-GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTT 75431 |||| |||||||| || |||| | || | | ||||| |||||||||||||| || | Sbjct 168103 CAACAGTGAACTGGATAGGAGCAGCAGCGGCCTGGGTACGCAGATAGTACATACCCGTCT 168044 Query 75432 TTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGG 75491 | ||||| || |||| || || |||||||| || | ||| | | || || Sbjct 168043 TGAGACCAAGCTTCCAACCCGCAAAGTGCATGCTGGTAATCTTGCCCATAGTTGGGTCCT 167984 Query 75492 CTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTT 75551 || ||||| |||| ||||||| ||||| || || || || | ||||| ||||| | Sbjct 167983 TCATGTGAATGTTCAACGACTGAGACTGATCAATAAAGGCACCACGGTCAGCAGCCATCT 167924 Query 75552 TTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTG 75611 | || || |||| ||| ||||||| ||| ||| | | ||||| || | | Sbjct 167923 GAACAACAGTACGCTGAGAAATCTCCCAAACAGTCTTGTACAGAGACTTGATGTCCGCCG 167864 Query 75612 GAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCAT 75668 ||| | | | | || || || || ||| || || || || ||||| || | | Sbjct 167863 GAATACTGGGAATGTTCTGGATAGAACCGTTGTCCGAAATGATGCGGTTCTTCATGTTGT 167804 Query 75669 CATTCCACAATTTTCTCTCGGTTAAAA----CTCTAAGGAGATGAGGATTAACAATTTGA 75724 | ||||| | ||| || | | | ||| | ||| || |||| || Sbjct 167803 CCGACCACAGAC----CAAGGTCAACAAGGTCGCGAAGCAACCAAGGGTTGACAACCTGG 167748 Query 75725 AATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 75784 || || |||| ||| || | || |||||| || || || || || | | || Sbjct 167747 AACTCACCAGCCAACACACGGCGCTGGTAAATGTTCGAAGTGTAAGGCTCGAAGCACTCG 167688 Query 75785 TTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTT 75844 ||||| |||| ||| || | |||||| ||||| ||||| || |||| | | || Sbjct 167687 TTGTTACCCAGAATCTGGGAAGTTGACGCAGTGGGCATGGGCGCCAGGAGCAGCGAGTTG 167628 Query 75845 CTGAGACCATGTGTTCTGATT----TTATCTTTTAGATATTTCCAATCCCAAAGATCTGA 75900 | | ||| |||||| || | || || ||| | ||||||||||| || || Sbjct 167627 CGAACACC----GTTCTGCTTAATCTGCTCCTTCAGAGAGTTCCAATCCCACAGGTCACT 167572 Query 75901 TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAG-CATATGATCCATTAT 75959 || |||||||| | ||| | || || || || | | || || || || | | Sbjct 167571 GGGCGTGACATCCCACATGTCGAACTGAAGGATACCCT-GAGAGACAGGAGAGCCCTCGT 167513 Query 75960 ATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAAT 76019 | || |||||| || || |||| | ||||| ||||| | ||| ||| | Sbjct 167512 ACGTCGAGTAAGTACCTTCAACAGCAGCGATATCGCATGAAGCCTCCAGAGCAGCGTGGT 167453 Query 76020 AAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCA--AGACTATCAAAAGGATA 76077 |||| || ||||| |||| ||| || || | | || || ||||| ||||||| Sbjct 167452 AAATGGTCTCGAAGATCTGCTTGTTGAGCTGACGAGCCTCGGCAGACT--CAAAAGGC-- 167397 Query 76078 ATGTAAAAGAATA--AATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 ||| || | | || ||||| || || ||||| || |||| |||||| || | || Sbjct 167396 ATGCGAAGGGCCAGGAAGGCATCGGCCAGACCCTGGACACCAACACCAATGGGACGGTGA 167337 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 | | | ||| | || || || |||||| | || | ||| || || || Sbjct 167336 CGCATGTTGCTGTTCCGGGCCTCGACAACAGGGTAGTGGTTCACATCAATGATACGGTTC 167277 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA----TTTTCC 76251 | || | |||||| || || || || | || || | || || | || | Sbjct 167276 AAGTTGCGGACAACAACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAGCAGTTGTTG 167217 Query 76252 ATCTA-TCA-CAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTA 76309 | || ||| |||| | ||||| | || || | || || || || ||||||| | Sbjct 167216 GTGTAGTCAACAAAGGCAGGGAGAGCAAGCGACGCCAAGTTGCACACAGCCACCTCATCA 167157 Query 76310 GCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTT 76369 | | | || | || ||||| ||||| || || || |||||||| || || Sbjct 167156 GGAGCGCAGTACTCGATAATCTCAGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTC 167097 Query 76370 TGTTGGTTGCTCTTTTTGTTACA-TGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTC 76428 | ||||| ||||| ||| || ||| ||||| || | | || || | ||||| || Sbjct 167096 TTCTGGTTACTCTTGCGGTTGCAGTGA-TCCTTGTACAACATGAAAGGGTTACCAGTCTC 167038 Query 76429 AATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATAGATTTGTATC 76487 |||| | ||| | ||||| | ||| | | ||| ||| || || || | | Sbjct 167037 CGTCTGAGCTTCCAGAATAGCATACCACA-GCTTCTGAGCCTTGATGGTAAGACGGCCAC 166979 Query 76488 G--CTTCTCTCTTTCATA-TTGT-GTATATAACCGTTCAAATTCATCTCCCCAAACATCA 76543 | |||| | || | || ||| ||| | | || |||||||| || || || |||| Sbjct 166978 GTCCTTCCCGCT--CGTACTTGACGTAAAGAGCC--TCAAATTCCTCACCGTAACAATCA 166923 Query 76544 TCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGT 76603 |||| ||||| || || || || ||||| | | ||| || || | | || ||| || Sbjct 166922 GCCAAGCCAGGGCACTCGTTGGGGCACATGAGGGTCCATTCGCCGTTCTTCTCAACACGC 166863 Query 76604 TTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCA 76663 ||||| || | ||| || ||||| || |||| || | ||| || | | | || || Sbjct 166862 TTCATGAACAAATCGGGGATCCACAGGGCAAGGAACAAATCGCGAGCGCGAATCTCCTCC 166803 Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 || || ||||| || || |||||||| | | ||||| ||||| || || || Sbjct 166802 TTACCGTGGTTCTTCCGGAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGCTCCAGG 166743 Query 76724 TATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTA 76783 || || || | | |||| || || || ||||| |||||||| | || | ||||||||| Sbjct 166742 TAAATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACGTAACGAGCAGTGTTA 166683 Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAA 76843 || | || | || ||| |||| ||| ||||| || ||||| || || || | |||||| Sbjct 166682 TTGAAGACACGCAGCATAGGAACAATACCGTTCGAGGTACCGTTGGTGCCGGCAATATAG 166623 Query 76844 CTTCCACATGCACGAATATTACTAATAGAT-AGGCCTATTCCTCCTGCCATTTTAGAGAT 76902 || ||||| ||| | | | | || || || || || ||||| || ||||| Sbjct 166622 GAACCGGTAGCACGGATA-CGGTGAGCGTTGAGACCGATACCACCCGCCATCTTGGAGAT 166564 Query 76903 TAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGT-TAA 76961 | ||||||| || | || |||||||| || || ||||| || ||| |||||| || Sbjct 166563 CATAGCACAGGTCTTGAGGGTATCATAGATACCTTCGATACTGTCCTCCTTCATGTCTAC 166504 Query 76962 GAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATG 77021 ||| || ||| ||| | ||| | ||| || || || || || | |||||||| | Sbjct 166503 CAAG-AAGCAGGAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGG 166445 Query 77022 CATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAAC-TGCT--TCTATAT 77078 | |||||||| | || || | |||||||| ||||| | ||| ||| | ||| Sbjct 166444 CGTGAGTGAAGAACTTGCTCGACATGAGATTGTAAGTTTCCAGAACACGCTCAACATTAT 166385 Query 77079 C-CCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTC 77137 | || | || || ||||| |||||||| | ||| |||||||| || || ||| || Sbjct 166384 CACCCCAG----ATACCGACAGCAACACGCATAATCATGTGCTGAGGACGCTCGACAATC 166329 Query 77138 TTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATA 77190 || || | || | | ||| ||| |||||| || || || ||||| || Sbjct 166328 TTGCCATCAAGCTTGAGAAGGTAAGATCTTTCCAGGGTCTTGAATCCAAAGTA 166276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931182883520