Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq68 183 6e-41 seq44 181 2e-40 seq33 178 3e-39 seq185 127 4e-24 seq32 95.1 3e-14 seq15 89.7 1e-12 >seq68 Length=156602 Score = 183 bits (202), Expect = 6e-41 Identities = 172/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || ||||| || | ||| || || |||||||||||||| | Sbjct 123675 ACCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 123734 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || ||||||| || |||||||| || Sbjct 123735 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGG 123794 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| |||||||| | || ||| | ||||| |||||||||| ||||| Sbjct 123795 AATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 123854 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || || ||||| ||||||||||||| ||||| ||||| Sbjct 123855 CTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAA 123893 >seq44 Length=213652 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | || || || || ||||||||||| | Sbjct 152455 ACCACCACGAAGGCGGAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGA 152514 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||||||||| || || || || || |||||||| | ||| || ||||| || Sbjct 152515 GAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGGGG 152574 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| |||||||||| || ||| | ||||||||||| || | || || Sbjct 152575 AATACCCTCCTTGTCCTGGATCTTTGACTTGACGTTGTCGATAGTGTCAGAGGACTCAAC 152634 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || |||| |||||| ||||| |||||||| Sbjct 152635 CTCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAAATCTGCAT 152682 Score = 179 bits (198), Expect = 8e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || ||||| || | ||| || || |||||||||||||||| Sbjct 152000 CCACCACGAAGACGGAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 152059 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || || |||||||| | ||| || ||||| || Sbjct 152060 AGGGTACGGCCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGG 152119 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||| ||||| || ||| | ||||| || || |||| ||||| Sbjct 152120 ATACCCTCCTTGTCCTGGATC-TTGCTCTTGACGTTGTCGATGGTATCGGAAGACTCGAC 152178 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || |||| |||||| ||||| |||||||| Sbjct 152179 CTCGAGAGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 152226 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || || || | ||| || ||||| ||||||||||| | Sbjct 152227 ACCACCACGCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGA 152286 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||| ||||||||||| || || || || || || |||| || || ||||| || Sbjct 152287 GAGCGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGG 152346 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| | || || | || || || ||||| | ||||| Sbjct 152347 AATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATGGTATCCGACGACTCGAC 152406 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || |||| ||||| ||||| |||||||| Sbjct 152407 CTCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 152454 Score = 111 bits (122), Expect = 3e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | || || || || ||||||||||| | Sbjct 152683 ACCACCACGAAGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGA 152742 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || || || || |||| || || ||||| || Sbjct 152743 GAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGG 152802 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || || | || || || || || | || || Sbjct 152803 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAAC 152862 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| ||||| || || Sbjct 152863 CTCGAGGGTGATGGTCTTGCCGGT 152886 >seq33 Length=249776 Score = 178 bits (196), Expect = 3e-39 Identities = 154/191 (81%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||||| ||| |||||||||||||| || || || || || || ||| Sbjct 209242 TTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAATC 209183 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || || ||||| ||||| ||||||||||| |||||||| | || ||| | ||| Sbjct 209182 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 209123 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || |||||||||| ||||| || || ||||||||||||||||| | ||||||||||| Sbjct 209122 ATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAA 209063 Query 283092 ATCTGCATTTT 283102 |||||||| || Sbjct 209062 ATCTGCATCTT 209052 >seq185 Length=20677 Score = 127 bits (140), Expect = 4e-24 Identities = 177/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 ||| |||| || | || | | ||| ||||||||| || ||| ||| |||| ||| | Sbjct 16942 ATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCT 16883 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 ||| |||| ||||| ||||| |||||| | |||||||| ||||| || || ||| || Sbjct 16882 CTTCTCGGTATGAACGCTGACCTCATGAAGACCTATATCGAGTTCGTCGCCGACCGTCTT 16823 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 | || || || || |||| || || || || || |||||||||| || |||||| Sbjct 16822 CTGGTCGCTCTCGGTAACGACAAGGTATACAAGGCCTCCAACCCCTTCGACTTCATGGAG 16763 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402 ||| || || || || || ||||||||||| |||||||| | ||||| || | | Sbjct 16762 AACATCTCCCTTGGTGGAAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTACCAGAAG 16703 Query 230403 CCCGGTGT 230410 | ||||| Sbjct 16702 GCTGGTGT 16695 >seq32 Length=251022 Score = 95.1 bits (104), Expect = 3e-14 Identities = 201/293 (69%), Gaps = 9/293 (3%) Strand=Plus/Plus Query 274431 ACGATGGGCGTGATAAATTTCTTCAGGAAACCTGGAATTTCTAGCAGACTGGGGAAACAA 274490 |||| || ||||| |||| || | ||| || ||||| | ||||| ||||| | Sbjct 79552 ACGACAGGAGTGATGAATTCTTTGAAGAACCCAGGAATCTTAAGCAGTGAAGGGAACTGA 79611 Query 274491 CTATGGAAAAAGTTCATGACAAGACC--TGATATGTGAGTTCCGTCAACGTCGGCATCTG 274548 || || ||||| || | |||||| ||||||| || || || || ||| | Sbjct 79612 ACCTGTAAGAAGTTGATCAAAAGACCCTTGATATGCGAA--CCATCGTGATCCTGATCGG 79669 Query 274549 TCATGATCATAACATGTCCATACCGAAGCGAGGAAGTATCTTTATACAACTTCCCTGT-- 274606 ||||||||| | || ||||| ||||||| ||||| |||| |||| | ||| Sbjct 79670 CCATGATCATCAGGTGACCATAACGAAGCGTCTTGGTATCCGTATA-AACTGTCTTGTGC 79728 Query 274607 TTGAAGCCCAAGAATTTGCTTGAGAGCGGTGATTTCTTCGTTCTTTGTGATACTCGCCAC 274666 |||| |||||||| | | || | | ||||||| |||||| || || ||| Sbjct 79729 TTGAGACCCAAGAACT-GTTTAATATTTTGAATTTCTTGGTTCTTGGTAATTTGGTCCAA 79787 Query 274667 AGAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCC-ATAC 274718 |||||||||||| ||||| | || |||||| || || ||||||||||| |||| Sbjct 79788 AGAAGCATCACGGACGTTTAACATCTTACCACGAAGTGGGAAAACGCCGATAC 79840 >seq15 Length=363638 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 315651 GTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAG 315710 |||| |||| | | || ||||| ||||| |||||| |||| | || ||||||||| Sbjct 114225 GTGAGTAATGATGATGACACCACCCTCGAAAGACTTAAGAGCCTTGGACAGGGCACCGAG 114284 Query 315711 ACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCA 315770 | || || || | | ||||||| ||||||||||||||||| | ||| || | ||||| Sbjct 114285 AGAGTCACGATCAAGATAGTTGGTAGGCTCATCAAGAACGATCAAGTGAGGACGCTGCCA 114344 Query 315771 TAGAGC-GGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAG 315829 |||| |||| | | |||| ||| | || ||||||||||| || ||||| | Sbjct 114345 -CGAGCAGGCGGCAAGGACGACCTTGACACGCTGACCACCAGACAGACCCTTCATGCGGG 114403 Query 315830 AATGAG 315835 | |||| Sbjct 114404 AGTGAG 114409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046734358504094