Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq44 150 4e-31 seq33 127 5e-24 seq68 123 6e-23 >seq44 Length=213652 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || || || || ||||| |||||||| || ||| ||| Sbjct 152679 CAGATTTTCGTCAAGACTCTGACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCTGAC 152620 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||| |||||||| || || || || ||||||||||| Sbjct 152619 ACTATCGACAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAG 152560 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || ||||| |||||||| | || || |||| || ||| | Sbjct 152559 CGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACATT 152500 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 152499 CAGAAGGAGTCTACTCTCCACCTTGT 152474 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || ||||| || ||||| |||||||| || || || Sbjct 152223 CAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACTCTCGAGGTCGAGTCTTCCGAT 152164 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| ||||||||||| Sbjct 152163 ACCATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 152104 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || ||||| || || || | || || | || || ||| || Sbjct 152103 CGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACAACATC 152044 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || || ||| Sbjct 152043 CAGAAGGAGTCCACTCTCCACCTGGTT 152017 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || || || ||||| ||||| || || || Sbjct 152451 CAGATTTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTTGAGGTCGAGTCGTCGGAT 152392 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| || || || || ||||||||||| Sbjct 152391 ACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAGCAG 152332 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| || ||||| | || || | || || ||| | Sbjct 152331 CGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGTACGCTCTCGGACTACAACATT 152272 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || || |||||| Sbjct 152271 CAAAAGGAGTCCACCCTTCACCTTGTT 152245 Score = 116 bits (128), Expect = 9e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||||||||| || ||| || ||||| || || ||||| Sbjct 152888 TCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGATACCATTGACAATGTCAAGT 152829 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || ||||| ||||||||||| || || || ||||| || | Sbjct 152828 CCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCCTGATTTTCGCTGGCA 152769 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || ||||| | || || |||| || ||| | || || || || || || | Sbjct 152768 AGCAGCTTGAGGATGGTCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCTACTCTCC 152709 Query 178123 ATCTTGT 178129 | || || Sbjct 152708 ACCTCGT 152702 >seq33 Length=249776 Score = 127 bits (140), Expect = 5e-24 Identities = 148/199 (74%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | |||||||| || || || || || || ||||||||||| |||| Sbjct 209047 AGGTCAAGATGC---AGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGG 209103 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | || || ||||| ||||| |||||||| ||||| |||||||| || || || | Sbjct 209104 TCGAGTCTTCGGACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTC 209163 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 | ||||||||||| || || || ||||| || || ||||| || ||||| | || ||| Sbjct 209164 CCCCGGACCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTT 209223 Query 178090 CCGATTATAACGTCCAAAA 178108 | || || ||| |||| || Sbjct 209224 CTGACTACAACATCCAGAA 209242 >seq68 Length=156602 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 |||||| || || || || || || || |||||||| ||||| || || |||||||| Sbjct 123894 TTTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCTTCGGACACCAT 123835 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| |||||||| ||||| |||||||| || || || || |||||||| || || || Sbjct 123834 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAACAGCGCCT 123775 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || ||||| || ||||| | || || | || || ||| |||| || Sbjct 123774 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 123715 Query 178109 AGAATCAACACTGCATCTTGT 178129 || || || || || || || Sbjct 123714 GGAGTCCACTCTCCACCTGGT 123694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203725632367034