Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq68 156 4e-33 seq33 150 2e-31 seq44 147 2e-30 >seq68 Length=156602 Score = 156 bits (172), Expect = 4e-33 Identities = 168/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||||||| ||||| ||||| || Sbjct 123676 CCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 123735 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| ||||||||||||||||||| |||| Sbjct 123736 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 123795 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| ||| | | | ||||| ||||| || Sbjct 123796 ATACCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCCGAAGACTCGAC 123854 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854 ||||| || || || ||||||||||| ||||| |||||| Sbjct 123855 CTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAAA 123894 >seq33 Length=249776 Score = 150 bits (166), Expect = 2e-31 Identities = 161/209 (77%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 41659 ATGCAGCGTG-CTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCT 41717 ||| || ||| || ||||||| ||||| ||||| || |||||||| | || || |||| Sbjct 209259 ATGGAGAGTGACTAACCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCT 209200 Query 41718 GCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTT 41777 ||||||| ||||| ||||||||||| ||||||| ||||| || |||||||||| ||| | Sbjct 209199 GCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCT 209140 Query 41778 TTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCC 41836 | ||| ||| | | | ||||| ||||| ||||| | || ||||| |||||| Sbjct 209139 TGGACTT-GACGTTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCC 209081 Query 41837 GTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || ||||| |||||||||||||| || Sbjct 209080 GTAAGGGTCTTAACGAAAATCTGCATCTT 209052 >seq44 Length=213652 Score = 147 bits (162), Expect = 2e-30 Identities = 150/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| ||||||||||||||||| | || || ||||||||||| || || Sbjct 152491 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAA 152550 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || ||||| ||||||| ||||| | |||||||||| ||| ||| ||| ||| Sbjct 152551 GATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTTGACTT-GACGT 152609 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | |||||| ||||| ||||| | || || || || || ||||| ||||| | Sbjct 152610 TGTCGATAGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTGA 152669 Query 41850 CGAAAATCTGCAT 41862 ||||||||||||| Sbjct 152670 CGAAAATCTGCAT 152682 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| |||||| |||||||| ||||| ||| Sbjct 152228 CCACCACGCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGAG 152287 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || |||||||| || ||||| ||||||||||| ||||||| |||| Sbjct 152288 AGCGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 152347 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || | | || | | | || || |||||| || Sbjct 152348 ATACCCTCCTTGTCC-TGAATCTTCGACTTGACATTGTCAATGGTATCCGACGACTCGAC 152406 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||| ||||| |||||||||||||| Sbjct 152407 CTCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 152454 Score = 118 bits (130), Expect = 1e-21 Identities = 91/108 (84%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| ||||||||||||||||| | || || ||||||||||| ||||| Sbjct 152719 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAA 152778 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 ||||||||||| ||||||| ||| | | |||||||||| ||| || Sbjct 152779 AATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTT 152826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301913853200