Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq678 114 3e-20
>seq678
Length=9679
Score = 114 bits (126), Expect = 3e-20
Identities = 310/469 (66%), Gaps = 8/469 (2%)
Strand=Plus/Plus
Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232
||||| | ||||| || |||| | |||||| ||||| | ||| || ||||
Sbjct 7977 TTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTTC 8036
Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292
||||||||||| || ||| ||| | ||| |||| || | | || ||||||
Sbjct 8037 GCATCCATCTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACGAG 8096
Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAAGCT 230351
|| ||| || |||||||||||||| || | || || || | | | || | ||
Sbjct 8097 TTGATCTCCCGTGACGAGGGTCTCCA-CACCGATTTTGCATGCCTCCTCTTCTCCCATCT 8155
Query 230352 CCAGAACAAGCTACCATTCGAGACGG---TCAAACAAATCATTACAGAAGCAGTTGAAAA 230408
| || || || ||| | || | | || || |||| || || || ||||| |
Sbjct 8156 CAAGCACC-GC--CCAAGCAAGGCTGCTGTCCAAGCTGTCATCACTGAGGCTGTTGAGAT 8212
Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACT 230468
|| |||||||| | ||| ||| |||| ||| || |||| |||||||||| |
Sbjct 8213 TGAGCAGGAGTTCTTGACTGAGGCTCTTCCTTGTGCTCTCCTTGGTATGAACGCTGGCTT 8272
Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528
||| || |||||||| ||||| || || ||| || | || | || || | |||||
Sbjct 8273 GATGAAGCAATACATCGAGTTCGTTGCTGATCGCCTTCTCCTTTCCCTCGGCAATGAGAA 8332
Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588
|| ||||| | ||||| || | || |||||| ||| || ||| || |||||
Sbjct 8333 GGTTTACAAGGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGAAAGAC 8392
Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
|||||||||||| |||||||| ||| || || | | | ||||| |||
Sbjct 8393 CAACTTCTTCGAGAAGCGTGTTGCTGATTACCAAAAGGCCGGTGTCATG 8441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057759635045870
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |