Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq678 114 3e-20 >seq678 Length=9679 Score = 114 bits (126), Expect = 3e-20 Identities = 310/469 (66%), Gaps = 8/469 (2%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 ||||| | ||||| || |||| | |||||| ||||| | ||| || |||| Sbjct 7977 TTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTTC 8036 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| || ||| ||| | ||| |||| || | | || |||||| Sbjct 8037 GCATCCATCTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACGAG 8096 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAAGCT 230351 || ||| || |||||||||||||| || | || || || | | | || | || Sbjct 8097 TTGATCTCCCGTGACGAGGGTCTCCA-CACCGATTTTGCATGCCTCCTCTTCTCCCATCT 8155 Query 230352 CCAGAACAAGCTACCATTCGAGACGG---TCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 | || || || ||| | || | | || || |||| || || || ||||| | Sbjct 8156 CAAGCACC-GC--CCAAGCAAGGCTGCTGTCCAAGCTGTCATCACTGAGGCTGTTGAGAT 8212 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACT 230468 || |||||||| | ||| ||| |||| ||| || |||| |||||||||| | Sbjct 8213 TGAGCAGGAGTTCTTGACTGAGGCTCTTCCTTGTGCTCTCCTTGGTATGAACGCTGGCTT 8272 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| || |||||||| ||||| || || ||| || | || | || || | ||||| Sbjct 8273 GATGAAGCAATACATCGAGTTCGTTGCTGATCGCCTTCTCCTTTCCCTCGGCAATGAGAA 8332 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 || ||||| | ||||| || | || |||||| ||| || ||| || ||||| Sbjct 8333 GGTTTACAAGGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGAAAGAC 8392 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||||||| |||||||| ||| || || | | | ||||| ||| Sbjct 8393 CAACTTCTTCGAGAAGCGTGTTGCTGATTACCAAAAGGCCGGTGTCATG 8441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057759635045870