Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4538 241 2e-58 seq678 118 1e-21 >seq4538 Length=19519 Score = 241 bits (266), Expect = 2e-58 Identities = 1324/2072 (64%), Gaps = 63/2072 (3%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||||||||| || || || || | | || || |||||||||||||| || || ||| Sbjct 8530 GTGAATTGAATAGGTGCTGAGGCAGCCATGGTTCGGAGATAGTACATTCCAGTCTTGAGA 8471 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGA-ATAACTCGGATCTGCTAT 52926 || | |||| || ||||||||||| || | || || | || || | || Sbjct 8470 CCCAACTTCCAACCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 8412 Query 52927 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 52986 ||||| ||||| |||||| |||||| ||||| || || | || |||||||| | | Sbjct 8411 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATCTGGAC 8352 Query 52987 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 53046 ||| || ||||| || ||||||| ||| || |||| ||| ||||| |||| | Sbjct 8351 GATAGTACGTTGTGAGATCTCCCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGAT 8292 Query 53047 GTTTGTA---TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 53103 ||||| | || || || ||||||||||| | || || | ||||| || | ||| Sbjct 8291 GTTTGGAACATTTTGGATTGATCCACCATCAGCGATGATTCGGTTCTTCATGTTGTCAGA 8232 Query 53104 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163 ||| | | | || | | | || || || || || ||||| || ||||| Sbjct 8231 CCAAAGTCCCATATCAACAAGGTCCTTCAGAAGCCATGGGTTGACAACTTGGAACTCTCC 8172 Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT-- 53221 || | || | |||| ||| || || ||||| || || | || |||| || Sbjct 8171 AGCAAGAACACGACGAGAGTAGATGTTGGAAGTATATGGCTCGA-AG---CATTCGTTGA 8116 Query 53222 -CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 53279 ||||| ||||||| || ||||| |||||||| || || | ||||| || | || Sbjct 8115 ACCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAA 8056 Query 53280 GACCGTA-TGTTCTGATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCGACGGTAC 53337 |||| | || | ||| | | || | || | |||| | |||||| || | ||| Sbjct 8055 GACCATGCTGGGC-GATCTGTTGCTTCA-AGCTAGCCCAGTCCCAAAGGTCGGTAGGTGT 7998 Query 53338 AACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 53397 ||| || || || ||| || ||| ||||||| || Sbjct 7997 CTTGCCCCACATGTCATATTGAAGCTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTC 7938 Query 53398 GTATGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGG 53456 ||||| ||| | ||| || || || || | || || ||| ||| ||| || | Sbjct 7937 GTATGTTCCATGGGTCTTTGCCAGCTCGACGGATGCAGTCAAA-GCAGCGTGATAGATTG 7879 Query 53457 TTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAG 53515 | || || || | | || || | | || || ||| | || || ||| | ||| Sbjct 7878 TCTCAAAAATTTGGATGTTGAGGTGCTTAGCCTCT-GGCGACTCGAAAGGA-AGGCGAAG 7821 Query 53516 AG--AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 53573 | || ||| || || || | ||||||||||||| | | || ||||| || | || Sbjct 7820 TGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAAT 7762 Query 53574 TAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTT 53632 | | |||| |||||||||| || || || || ||||| ||||| ||||| | ||| Sbjct 7761 T-GCTCTTTCTTGCTTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTTC 7703 Query 53633 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATTGTCCATCTATTA- 53690 |||||| |||| | || || | || || | || ||| || || | ||| || Sbjct 7702 TTGACAACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCA 7643 Query 53691 -CAA-ACATGTTCAATG--CAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 53746 ||| | ||||| | | ||| ||||||| ||| |||||||| || |||| | | | Sbjct 7642 TCAACATATGTTGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATCTGG-TGC 7584 Query 53747 GCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 53805 || || | | ||||| ||||| || || | |||||| || | || | || Sbjct 7583 ACAGTACTCAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTG 7524 Query 53806 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTG 53865 || |||||| ||| || |||||||| || || ||||| || | || || || |||| Sbjct 7523 GTTGCTCTTTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTG 7464 Query 53866 GGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT-TT 53924 | ||| | ||| | | ||| | ||||||| | || || | | | || Sbjct 7463 AGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAC---AGTCTTACGGCCCATGTT 7407 Query 53925 CTCTT--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 ||| |||||| |||||| |||||||| || || |||| | |||| || Sbjct 7406 CTCAGCCTCGTATTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACC 7347 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 |||||| || | || |||||||| | ||| || || | | || || ||||| || Sbjct 7346 AGGACACTCGTTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAA 7287 Query 54043 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101 | ||| |||||||||||||| ||| || ||||| | || | || || ||||| Sbjct 7286 TAAATCTGGAATCCAAAGAGC-ATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGT 7228 Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 |||||| || || |||||| | | | ||||| ||||| || || | ||| |||| Sbjct 7227 GGTTCTTTCGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGG 7168 Query 54162 TCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 54221 | | | ||||| || ||||| || |||||||| | ||||| |||||||| || ||| Sbjct 7167 CAAAAGCACCAGGACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAA 7108 Query 54222 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 54281 ||| | ||| |||| ||| || ||||| || || || || | || ||| |||| Sbjct 7107 CTCGAAGCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAG 7048 Query 54282 TGGCACGAATATT----ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAAT 54337 ||||||| || | || ||| ||||| || || || || | ||||| || | Sbjct 7047 TGGCACGGATTCTGTGGAC--ATT--AAGACCGATACCACCAGCGTTCTTAGAAATCATA 6992 Query 54338 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397 ||||| || || || ||||| || || || || || || ||| |||||| | || Sbjct 6991 GCGCAAGTCTTCAAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGG 6932 Query 54398 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 54457 ||||| || | ||| | ||| || ||| ||| | || ||||| ||||| Sbjct 6931 AAACATGATGAGAGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGG 6872 Query 54458 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATA-TCCCATTG 54516 ||||| |||| || | | ||||| ||||| || || | || ||| | || | Sbjct 6871 GTAAAGTATTTGCTGGACATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCG 6812 Query 54517 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 54576 ||||| || || || |||||||| | ||| || || || | ||| |||||| | Sbjct 6811 -TGAATACCAACAGCAACACGCATAATCATATGTTGTGGACGTTCGCAAATCTTGCCATC 6753 Query 54577 TATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAG 54634 | || | || ||| || | || || || || || || | ||| ||||| Sbjct 6752 GAGACGGAGGAGATATGATCGCTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAA-- 6695 Query 54635 TCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATG 54694 || || ||||| | ||| | |||||||| | ||| || || | || |||| ||| Sbjct 6694 TCACGGTCGTACACAATGGCAGAGTTGAGCTCGGCCTCATGCTTCATGAC-ACATTCAT- 6637 Query 54695 GTAATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATA 54752 | | ||| || || || || | | || ||| |||||||||||||| ||| Sbjct 6636 ATGTTGCTTTGCTGATCATAGGTGACTCTCTCTTGTTTCGAGGATTGACATAGTGGTATA 6577 Query 54753 AATCCTTCATCACTTCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 54811 | || || || | | | ||| | || || || | ||||| || || || || || Sbjct 6576 AGTCGGAAATAAC-GCTCGAGAATTGCTTCTTGGTCTGCTTGTGGAGGTTGGAAACTGCA 6518 Query 54812 ATTCTAGCGGCTAGAATGGCATAATCCGGATG 54843 ||||| || || || ||||||||||| ||||| Sbjct 6517 ATTCTTGCAGCGAGGATGGCATAATCGGGATG 6486 >seq678 Length=9679 Score = 118 bits (130), Expect = 1e-21 Identities = 336/513 (65%), Gaps = 5/513 (1%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 |||||||| ||| | ||||| || ||||| || || || || || | | || || || Sbjct 8428 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTC 8369 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963 |||||||| ||| |||| |||| ||| || || | ||| | | | || | | | Sbjct 8368 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAAC-CTTCTCATTGCCGAGGGAAAGGAG 8310 Query 23964 AAT-CTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 || | ||| || || ||||| || ||| ||||||| || ||||| || | || Sbjct 8309 AAGGCGATCAGCAACGAACTCGATGTATTGCTTCATCAAGCCAGCGTTCATACCAAGGAG 8250 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 | ||||||||| |||| | || || || ||||| || || || || || | Sbjct 8249 AGCACAAGGAAGAGCCTCAGTCAAGAACTCCTGCTCAATCTCAACAGCCTCAGTGATGAC 8190 Query 24083 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 24142 || | || | | | || || | | | | ||| || | | ||||| || Sbjct 8189 AGCTTGGACAGCAGCCTTGCTTGGGCGGTGCTTGAGATGGGAGAAGAGGAGGCATGCAAA 8130 Query 24143 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 24202 |||| ||| ||||||||||| | || || |||||||| || || || || | ||| Sbjct 8129 ATCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGACCAGCCAT 8070 Query 24203 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 24262 || |||||||| || | |||||| ||||| || || || ||| |||||| || || || Sbjct 8069 AAGACCACGCTTCTTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAGATACCCTC 8010 Query 24263 TACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCACTT 24319 || || |||||||||| ||| | || || | | | |||| || ||||| Sbjct 8009 AACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGACTCCTTGTCCTGGATCCAACG 7950 Query 24320 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 |||||||||||||||||| || | ||||| Sbjct 7949 AACAGCCCAATCGGCCTTCTTCTTGATGCAAGG 7917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593686355201520