Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq678 129 6e-25
seq4739 100 3e-16
seq1669 95.1 1e-14
seq4373 89.7 5e-13
>seq678
Length=9679
Score = 129 bits (142), Expect = 6e-25
Identities = 200/285 (70%), Gaps = 3/285 (1%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| ||||||||||| | |||||| | || ||
Sbjct 7527 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCGTTCTGGACTGCTGAGGAGATTGATCTA 7586
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752
|||||||| | ||||||| | | | ||||| ||||||| | ||||||
Sbjct 7587 TCCAAGGATCTCAACGACTGGAACAACAAGCTCAACGATGACGAGCGTTACTTCATCTCC 7646
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || || || || || ||| ||||| |||||||||||||| || | || ||
Sbjct 7647 CACGTCCTCGCTTTCTTTGCTGCCTCTGACGGAATCGTCAACGAGAACCTACTTGAACGC 7706
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| | || || || || | ||||| || | |||||| || || |||||| |||
Sbjct 7707 TTCAGCAATGAAGTTCAAGTTCCTGAGGCCCGATTCTTCTATGGTTTCCAGATCATGATG 7766
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||| | ||||| || | || || ||| || || || |||
Sbjct 7767 GAGAACATTCACTCTGAGACCTACTCCCTCCTTATTGATACCTAC 7811
Score = 127 bits (140), Expect = 2e-24
Identities = 262/387 (68%), Gaps = 2/387 (1%)
Strand=Plus/Plus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028
|| ||| |||| |||||||||| ||||| | || |||||| | || ||| | ||
Sbjct 7917 CCTTGCATCAAGAAGAAGGCCGATTGGGCTGTTCGTTGGATCCAGGACAAGGAGTCTACC 7976
Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088
|| | | || || || ||||| || || || ||||| |||||||| ||| ||||
Sbjct 7977 TTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTTC 8036
Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148
|| |||| |||||| | ||||| || || || ||| | || || |||||| |||||||
Sbjct 8037 GCATCCATCTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACGAG 8096
Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
| |||||| | ||||||||||| || ||| ||||| || | || ||| ||| |
Sbjct 8097 TTGATCTCCCGTGACGAGGGTCTCCACACCGATTTTGCATGCCTCCTCTTCTCCCATCTC 8156
Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268
||| || || ||| ||| ||| | || |||| || || || | || |||
Sbjct 8157 AAGCACCGCCCAAGCAAGGCTGCTGTCCAAGCTGTCATCACTGAGGCTGTTGAGATTGAG 8216
Query 117269 CAGCGCTTCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGAT 117327
||| ||| | || || || || || |||| ||| || || | || | |||
Sbjct 8217 CAGGAGTTCTTGACTGAGGCTCTTCCTTGTGC-TCTCCTTGGTATGAACGCTGGCTTGAT 8275
Query 117328 GTCGCAATACATCGAGTTCGTCGCCGA 117354
| |||||||||||||||||| || ||
Sbjct 8276 GAAGCAATACATCGAGTTCGTTGCTGA 8302
>seq4739
Length=56954
Score = 100 bits (110), Expect = 3e-16
Identities = 140/194 (72%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || | || ||||| ||||| || |||| |||||| | |||||| | |
Sbjct 20689 TCGTCAAGACTTTGACTGGCAAGACCATTACTCTCGAGGTCGAATCATCCGACACCATTG 20748
Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| |||| | ||| || |||| || || ||||| || || ||||||| ||||| ||
Sbjct 20749 ACAACGTT-AAGTCGAAGATTCAGGATAAGGAGGGTATTCCACCGGACCAACAACGTCTT 20807
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| || ||||| || || |||| || || ||| |||||||||||||| |||
Sbjct 20808 ATCTTCGCTGGTAAACAACTTGAGGACGGACGAACTCTCTCGGACTACAACATCCAAAAG 20867
Query 40879 GAGGCCACGCTGCA 40892
|| |||| || ||
Sbjct 20868 GAATCCACACTCCA 20881
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || || || || ||||| | || || ||| || ||
Sbjct 20907 ATGCAGATCTTCGTTAAGACCTTGACTGGAAAGACAATCACTTTGGAAGTTGAATCCTCC 20966
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | ||| || || | ||||| ||||| ||||| | || ||
Sbjct 20967 GATACTATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAA 21026
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| |||||||| | ||| ||||| || || || || | || ||| | ||||||||||
Sbjct 21027 CAGCGACTCATTTTCGCAGGCAAGCAACTTGAGGATGGCCGAACCTTGTCCGACTACAAC 21086
Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893
||||| |||||| |||| || |||
Sbjct 21087 ATCCAAAAGGAGTCCACTCTTCAT 21110
>seq1669
Length=79912
Score = 95.1 bits (104), Expect = 1e-14
Identities = 83/102 (81%), Gaps = 1/102 (1%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||| ||||| ||||||| ||||| || |||| ||| || ||||| || ||
Sbjct 7538 GACAAGGAGGGAATCCCACCGGACCAACAACGTCTAATCTTCGCCGGAAAACAACTCGAA 7479
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGG-AGGC 40883
|||| || ||||||| ||||||||||||||| |||| ||||
Sbjct 7478 GACGGCCGAACCCTCAGCGACTACAACATCCAAAAGGTAGGC 7437
>seq4373
Length=63444
Score = 89.7 bits (98), Expect = 5e-13
Identities = 90/117 (77%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||| ||||| | ||||| || || | |||| ||| || || || || ||
Sbjct 31565 GACAAGGAGGGAATCCCACCAGACCAACAGCGCTTGATCTTCGCCGGAAAGCAACTCGAA 31506
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|||| || ||||||| ||||||||||||||| |||||| | || || ||||| |||
Sbjct 31505 GACGGCCGTACCCTCAGCGACTACAACATCCAAAAGGAGTCGACCCTCCATCTCGTG 31449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515188615300240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |