Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq678 129 6e-25 seq4739 100 3e-16 seq1669 95.1 1e-14 seq4373 89.7 5e-13 >seq678 Length=9679 Score = 129 bits (142), Expect = 6e-25 Identities = 200/285 (70%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| ||||||||||| | |||||| | || || Sbjct 7527 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCGTTCTGGACTGCTGAGGAGATTGATCTA 7586 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||||||| | | | ||||| ||||||| | |||||| Sbjct 7587 TCCAAGGATCTCAACGACTGGAACAACAAGCTCAACGATGACGAGCGTTACTTCATCTCC 7646 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || || || ||| ||||| |||||||||||||| || | || || Sbjct 7647 CACGTCCTCGCTTTCTTTGCTGCCTCTGACGGAATCGTCAACGAGAACCTACTTGAACGC 7706 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | || || || || | ||||| || | |||||| || || |||||| ||| Sbjct 7707 TTCAGCAATGAAGTTCAAGTTCCTGAGGCCCGATTCTTCTATGGTTTCCAGATCATGATG 7766 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | || || ||| || || || ||| Sbjct 7767 GAGAACATTCACTCTGAGACCTACTCCCTCCTTATTGATACCTAC 7811 Score = 127 bits (140), Expect = 2e-24 Identities = 262/387 (68%), Gaps = 2/387 (1%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 || ||| |||| |||||||||| ||||| | || |||||| | || ||| | || Sbjct 7917 CCTTGCATCAAGAAGAAGGCCGATTGGGCTGTTCGTTGGATCCAGGACAAGGAGTCTACC 7976 Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 || | | || || || ||||| || || || ||||| |||||||| ||| |||| Sbjct 7977 TTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTTC 8036 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 || |||| |||||| | ||||| || || || ||| | || || |||||| ||||||| Sbjct 8037 GCATCCATCTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACGAG 8096 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | |||||| | ||||||||||| || ||| ||||| || | || ||| ||| | Sbjct 8097 TTGATCTCCCGTGACGAGGGTCTCCACACCGATTTTGCATGCCTCCTCTTCTCCCATCTC 8156 Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268 ||| || || ||| ||| ||| | || |||| || || || | || ||| Sbjct 8157 AAGCACCGCCCAAGCAAGGCTGCTGTCCAAGCTGTCATCACTGAGGCTGTTGAGATTGAG 8216 Query 117269 CAGCGCTTCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGAT 117327 ||| ||| | || || || || || |||| ||| || || | || | ||| Sbjct 8217 CAGGAGTTCTTGACTGAGGCTCTTCCTTGTGC-TCTCCTTGGTATGAACGCTGGCTTGAT 8275 Query 117328 GTCGCAATACATCGAGTTCGTCGCCGA 117354 | |||||||||||||||||| || || Sbjct 8276 GAAGCAATACATCGAGTTCGTTGCTGA 8302 >seq4739 Length=56954 Score = 100 bits (110), Expect = 3e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || | || ||||| ||||| || |||| |||||| | |||||| | | Sbjct 20689 TCGTCAAGACTTTGACTGGCAAGACCATTACTCTCGAGGTCGAATCATCCGACACCATTG 20748 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| | ||| || |||| || || ||||| || || ||||||| ||||| || Sbjct 20749 ACAACGTT-AAGTCGAAGATTCAGGATAAGGAGGGTATTCCACCGGACCAACAACGTCTT 20807 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || ||||| || || |||| || || ||| |||||||||||||| ||| Sbjct 20808 ATCTTCGCTGGTAAACAACTTGAGGACGGACGAACTCTCTCGGACTACAACATCCAAAAG 20867 Query 40879 GAGGCCACGCTGCA 40892 || |||| || || Sbjct 20868 GAATCCACACTCCA 20881 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || || ||||| | || || ||| || || Sbjct 20907 ATGCAGATCTTCGTTAAGACCTTGACTGGAAAGACAATCACTTTGGAAGTTGAATCCTCC 20966 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||| || || | ||||| ||||| ||||| | || || Sbjct 20967 GATACTATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAA 21026 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||| | ||| ||||| || || || || | || ||| | |||||||||| Sbjct 21027 CAGCGACTCATTTTCGCAGGCAAGCAACTTGAGGATGGCCGAACCTTGTCCGACTACAAC 21086 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| |||||| |||| || ||| Sbjct 21087 ATCCAAAAGGAGTCCACTCTTCAT 21110 >seq1669 Length=79912 Score = 95.1 bits (104), Expect = 1e-14 Identities = 83/102 (81%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| ||||| ||||||| ||||| || |||| ||| || ||||| || || Sbjct 7538 GACAAGGAGGGAATCCCACCGGACCAACAACGTCTAATCTTCGCCGGAAAACAACTCGAA 7479 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGG-AGGC 40883 |||| || ||||||| ||||||||||||||| |||| |||| Sbjct 7478 GACGGCCGAACCCTCAGCGACTACAACATCCAAAAGGTAGGC 7437 >seq4373 Length=63444 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| ||||| | ||||| || || | |||| ||| || || || || || Sbjct 31565 GACAAGGAGGGAATCCCACCAGACCAACAGCGCTTGATCTTCGCCGGAAAGCAACTCGAA 31506 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||| || ||||||| ||||||||||||||| |||||| | || || ||||| ||| Sbjct 31505 GACGGCCGTACCCTCAGCGACTACAACATCCAAAAGGAGTCGACCCTCCATCTCGTG 31449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515188615300240