Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 89.7 4e-13
>seq4739
Length=56954
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
||||| |||| | | ||||||||| | || ||| |||||||||||||| |||||
Sbjct 21361 CCTCCACGTAGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCTA 21302
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| || || |||||| | || || |||||| | || | ||||| || || || ||
Sbjct 21301 AGGGTACGACCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGGA 21242
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
|| |||||||| || || || || || | || | ||||||| ||| |||
Sbjct 21241 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTATCAATTGTGTCCGAAGACTCAACC 21182
Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| | || | || ||||| |||| ||| || ||||| ||||||||
Sbjct 21181 TCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135
Score = 87.8 bits (96), Expect = 2e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| |||||||| || ||||||||||||||| | || || ||||||
Sbjct 20604 ACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGAAAGGGTACGACCGTCCTCG 20545
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||||| || || ||| |||| | || || || || ||||| ||||| ||||||||
Sbjct 20544 AGCTGCTTGCCGGCGAAGATCAAGCGTTGTTGGTCTGGAGGAATGCCTTCCTTGTC 20489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433805290574308
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |