Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4739 113 5e-20 >seq4739 Length=56954 Score = 113 bits (124), Expect = 5e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 42952 ATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAAT 43011 |||||||||| | || ||| | |||||| |||| ||||||||||||||||| ||||| | Sbjct 21366 ATTGTCCTCCACGTAGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGT 21307 Query 43012 CAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071 | || || || | || || | |||||||||||||| || | |||||| ||||| | Sbjct 21306 CGCTAAGGGTACGACCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTG 21247 Query 43072 CCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATT 43131 || | | |||||| ||| ||| || |||| | | | ||||| || | Sbjct 21246 GTGGAATACCCTCCTTATCCTGGATCTTGGACTTGACATTATCAATTGTGTCCGAAGACT 21187 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || | ||| || || ||||| || | ||||| |||||||| ||||| Sbjct 21186 CAACCTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | |||| |||||||| || ||||| || | ||||| || |||| || Sbjct 20887 ACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCCTCA 20828 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || || ||||||||||| || || || || ||||| | || | | |||||| ||| || Sbjct 20827 AGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGAATACCCTCCTTATCC-TG 20769 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | || | | | ||| | | | |||||| ||||| || |||| || ||||| || Sbjct 20768 AATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGAGTAATGGTCTT 20709 Query 43154 GCCCGTTAGCGTCTTTAC 43171 ||| || | ||||| || Sbjct 20708 GCCAGTCAAAGTCTTGAC 20691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571783655477720