Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 113 5e-20
>seq4739
Length=56954
Score = 113 bits (124), Expect = 5e-20
Identities = 164/232 (71%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 42952 ATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAAT 43011
|||||||||| | || ||| | |||||| |||| ||||||||||||||||| ||||| |
Sbjct 21366 ATTGTCCTCCACGTAGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGT 21307
Query 43012 CAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071
| || || || | || || | |||||||||||||| || | |||||| ||||| |
Sbjct 21306 CGCTAAGGGTACGACCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTG 21247
Query 43072 CCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATT 43131
|| | | |||||| ||| ||| || |||| | | | ||||| || |
Sbjct 21246 GTGGAATACCCTCCTTATCCTGGATCTTGGACTTGACATTATCAATTGTGTCCGAAGACT 21187
Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || || | ||| || || ||||| || | ||||| |||||||| |||||
Sbjct 21186 CAACCTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135
Score = 84.2 bits (92), Expect = 3e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
||||| || | |||| |||||||| || ||||| || | ||||| || |||| ||
Sbjct 20887 ACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCCTCA 20828
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
|| || ||||||||||| || || || || ||||| | || | | |||||| ||| ||
Sbjct 20827 AGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGAATACCCTCCTTATCC-TG 20769
Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
| | || | | | ||| | | | |||||| ||||| || |||| || ||||| ||
Sbjct 20768 AATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGAGTAATGGTCTT 20709
Query 43154 GCCCGTTAGCGTCTTTAC 43171
||| || | ||||| ||
Sbjct 20708 GCCAGTCAAAGTCTTGAC 20691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571783655477720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |