Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq4739 96.9 2e-15 >seq4739 Length=56954 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || |||||||||||||||| ||| | || || | ||||||||||||||| Sbjct 21097 TCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATCCTCAAGTTGCTTGCCTGCGAAA 21038 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||| || || || | | ||||||||| ||||| ||| | || | Sbjct 21037 ATGAGTCGCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTGGACTTCACATTG 20978 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||||| ||||| || |||| ||||| || || || || | || || || Sbjct 20977 TCGATAGTATCGGAGGATTCAACTTCCAAAGTGATTGTCTTTCCAGTCAAGGTCTTAACG 20918 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 20917 AAGATCTGCAT 20907 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||||||| ||| | || || || || || |||||||||||| Sbjct 21362 TCCTCCACGTAGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCT 21303 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || ||||| ||||| || |||||||| | ||||| ||||| || Sbjct 21302 AAGGGTACGACCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGG 21243 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||| || ||||| ||| | || | || | || | || || || Sbjct 21242 AATACCCTCCTTATCCTGGATCTTGGACTTGACATTATCAATTGTGTCCGAAGACTCAAC 21183 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| || || ||||| || | ||| || |||||||||||||| Sbjct 21182 CTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323053301097440