Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq4739 143 2e-29 seq4373 91.5 1e-13 >seq4739 Length=56954 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||||||||||| ||||||||||||||| | || ||| | || ||| Sbjct 21343 ACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCTAAGGGTACGACCATCCTCC 21284 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| || || ||||| ||||| ||||||||||| || || | ||||||||| ||| Sbjct 21283 AATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGG 21224 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | ||||| | ||| ||||| | ||||| |||||| Sbjct 21223 ATCTTGGACTTGACATTATCAATTGTGTCCGAAGACTCAACCTCTAACGTAATTGTCTTG 21164 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||| |||||||| ||||| Sbjct 21163 CCTGTCAAAGTCTTGACAAAGATCTGCAT 21135 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||| ||| || ||| |||| || Sbjct 20604 ACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGAAAGGGTACGACCGTCCTCG 20545 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || |||||||| ||||| || |||||||| ||||| | || ||||||||| Sbjct 20544 AGCTGCTTGCCGGCGAAGATCAAGCGTTGTTGGTCTGGAGGAATGCCTTCCTTGTCC 20488 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | | ||| | |||||||| || ||| ||||| || ||||||||||| Sbjct 20905 CCACCACGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAG 20846 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || |||| || |||||||| || ||||| || | || |||||||| || || Sbjct 20845 AGAGTTCGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGA 20786 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||| ||| ||| || |||||| | | | |||| || ||| Sbjct 20785 ATACCCTCCTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACC 20726 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 || | ||||| |||||||| |||| |||||| || Sbjct 20725 TCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTGAC 20691 >seq4373 Length=63444 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| || |||||||||||| | || || |||| || ||||| ||||||||||| Sbjct 31467 CTCCTTTTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAA 31526 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| ||||||||||| || || | |||||||||||| Sbjct 31527 GATCAAGCGCTGTTGGTCTGGTGGGATTCCCTCCTTGTCC 31566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395052333664729