Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4538 288 9e-73 seq678 96.9 3e-15 >seq4538 Length=19519 Score = 288 bits (318), Expect = 9e-73 Identities = 638/952 (67%), Gaps = 4/952 (0%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTT-TGGACGTGTACTCTACAATTTCGGTACA 23085 || || | |||||| ||||| || || ||| || || |||||| ||||| || || || Sbjct 7618 GATGCCAAATTGCAAACGGCGACTTCATCTGGTGCACA-GTACTCAACAATCTCCGTGCA 7560 Query 23086 TAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATC 23145 || ||| | || || || | || |||||||||| ||||| ||||| | ||| Sbjct 7559 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCAGGCATC 7500 Query 23146 CTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACAT 23205 ||||||||||||| | || | || |||||| ||| | |||| || | ||| | Sbjct 7499 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAATAGAGTACCAAAG 7440 Query 23206 AGTCTGAGCGTGAACACGTCGCACGTACC-TGCCTTCTTCCTCGTACTTTTGGTACAACG 23264 | ||||| | ||| ||| ||| || || || ||||||| || | ||||| | Sbjct 7439 CTTTTGAGCCTTGACA-GTCTTACGGCCCATGTTCTCAGCCTCGTATTTCTCATACAAAG 7381 Query 23265 CGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324 | ||||| || |||||||| ||| |||| || || | | | || ||||| | Sbjct 7380 CCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGTTAGGGCACATCAATG 7321 Query 23325 TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384 |||| || |||||||| || |||| || | ||| || ||||| ||||| |||| Sbjct 7320 TCCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCTGGAATCCAAAGAGCATAGA 7261 Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444 | || || |||||||| ||||| || || ||| ||||||| | || | || || | Sbjct 7260 AAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGAGGTCAAGGAACTCAA 7201 Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504 | || || || ||||| ||||| ||||| | |||||| || || || | ||| || || | Sbjct 7200 AGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACCAGGACGCTTGTTACCAC 7141 Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564 ||||||| || || | ||| ||||||||| | |||| ||||| || || | ||||||| Sbjct 7140 CCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACAATTCCGTTGG 7081 Query 23565 ACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAAC 23624 | ||| | || || | | || | || || | |||| || | | || Sbjct 7080 AGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCACGGATTCTGTGGACATTAAGAC 7021 Query 23625 CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCT 23684 | || || || | || || ||||| ||||| |||| |||||| || || || | Sbjct 7020 CGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTGTCATAAATACCAT 6961 Query 23685 CGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAG 23744 | ||||||||||| || | ||| | |||||| || || | ||| |||| || ||| Sbjct 6960 CAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAGAGTTGTGCTTGTGGAGTAC 6901 Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACG 23804 | || | || ||||| || |||||| ||||||||| | ||||| | ||||| | Sbjct 6900 CAGCAGCAAAAAGTGTTGGAGAGGCGTGGGTAAAGTATTTGCTGGACATCAAGTTGTAGG 6841 Query 23805 TGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGT 23864 | || ||||| || ||||| | || ||||| ||||| | || || ||||| ||||| | Sbjct 6840 TCTCAATGGCAGCCTCAATATTATCACCGTGAATACCAACAGCAACACGCATAATCATAT 6781 Query 23865 ATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTT 23924 ||| || | ||| | ||| | | || |||||||| || | | || | Sbjct 6780 GTTGTGGACGTTCGCAAATCTTGCCATCGAGACGGAGGAGATATGATCGCTCGAGGGTCT 6721 Query 23925 TAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 | ||||| || || | ||||| || ||||| |||| ||| ||||| || || Sbjct 6720 TGAATCCGAAGTATTGGTAGTTGAAATCACGGTCGTACACAATGGCAGAGTT 6669 >seq678 Length=9679 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || || || || || ||||| |||||| ||| || || | || |||||| || Sbjct 7995 GCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTTCGCATCCATCTTTTGGTTG 8054 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| || || || ||| | || || || || |||||||||||| || || |||||| Sbjct 8055 AAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACGAGTTGATCTCCCGTGACGAG 8114 Query 58101 GGTCTCCATACTGATTTTGCGTGCCT 58126 |||||||| || |||||||| ||||| Sbjct 8115 GGTCTCCACACCGATTTTGCATGCCT 8140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445739938192080