Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq678 138 2e-27 seq661 91.5 3e-13 seq4538 87.8 4e-12 >seq678 Length=9679 Score = 138 bits (152), Expect = 2e-27 Identities = 166/225 (74%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 101851 CATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGAT---TTGGC 101907 |||||||||||||| | |||||| || |||||| || ||| | | || || Sbjct 7922 CATCAAGAAGAAGGCCGATTGGGCTGTTCGTTGGATCCAGGACAAGGAGTCTACCTTTGC 7981 Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967 ||| |||||||||||||||| ||||| || |||||||||||||| | |||||||| Sbjct 7982 TCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTTCGCATC 8041 Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 ||| || ||| | ||||| | ||| || || ||||||| || | |||||| ||||| || Sbjct 8042 CATCTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACGAGTTGAT 8101 Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 || | ||||| ||||| || ||| ||||||||| | || || Sbjct 8102 CTCCCGTGACGAGGGTCTCCACACCGATTTTGCATGCCTCCTCTT 8146 >seq661 Length=9767 Score = 91.5 bits (100), Expect = 3e-13 Identities = 198/294 (67%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 35327 ATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGAT 35386 ||| | |||||| ||| ||||| || |||| | | ||||| |||| | | | Sbjct 7758 ATAAAAATCTGGGACGGAAATGGAAGCCGCGAATATCTCGACAGCGTAGGGCTCTCACAC 7817 Query 35387 AGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAA 35446 | |||| || ||| | |||||||||||||| ||||||||||| ||||| || || || Sbjct 7818 CGCGCAGTCGGCGATCTAGGACCCGTATACGGCTTCCAATGGCGGCATTTCGGGGCAGAG 7877 Query 35447 TATGATACCTG-TTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACT 35505 |||| || || | ||||| || || ||||| | ||||||||||| | | | Sbjct 7878 TATG-TAGATGCGAAGACGGATTACACAGGGAAGGGGGTCGATCAATTGGCAGAGGTGAT 7936 Query 35506 AAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTAT 35565 ||| ||||| | || || ||||| || |||| || ||| || |||||||| Sbjct 7937 TGAGAAGCTGAGGAACAACCCGTATGATCGACGGATCATCCTGAGTGCGTGGAATCCCGC 7996 Query 35566 GGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 |||| | | | |||||| | || || || || ||| ||| || || || || Sbjct 7997 GGATTTGAAGATCATGGCTTTACCACCTTGTCATATGTTTGCGCAGTTCTACGT 8050 >seq4538 Length=19519 Score = 87.8 bits (96), Expect = 4e-12 Identities = 165/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| || ||||| |||| || || || || ||| | ||| ||||||||||| Sbjct 7021 CCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTGTCATAAATACCA 6962 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGT-GTGACTGT 94904 |||||||| || || | | | | | ||||| || || || ||||| | | ||| || Sbjct 6961 TCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAGAGTTGTGCTTGTGGA-GT 6903 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 ||| | ||| ||||| || || || |||||||| || | || ||||| | | || Sbjct 6902 ACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGTAAAGTATTTGCTGGACATCAAGTTGTA 6843 Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 || |||||| ||| | || | |||||||| || ||||| |||||||||||||| Sbjct 6842 GGTCTCAATGGCAGCCTCAATATTATCACCGTGAATACCAACAGCAACACGCATAATCAT 6783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989523787215295