Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq678 138 2e-27
seq661 91.5 3e-13
seq4538 87.8 4e-12
>seq678
Length=9679
Score = 138 bits (152), Expect = 2e-27
Identities = 166/225 (74%), Gaps = 3/225 (1%)
Strand=Plus/Plus
Query 101851 CATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGAT---TTGGC 101907
|||||||||||||| | |||||| || |||||| || ||| | | || ||
Sbjct 7922 CATCAAGAAGAAGGCCGATTGGGCTGTTCGTTGGATCCAGGACAAGGAGTCTACCTTTGC 7981
Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967
||| |||||||||||||||| ||||| || |||||||||||||| | ||||||||
Sbjct 7982 TCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTTCGCATC 8041
Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027
||| || ||| | ||||| | ||| || || ||||||| || | |||||| ||||| ||
Sbjct 8042 CATCTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACGAGTTGAT 8101
Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072
|| | ||||| ||||| || ||| ||||||||| | || ||
Sbjct 8102 CTCCCGTGACGAGGGTCTCCACACCGATTTTGCATGCCTCCTCTT 8146
>seq661
Length=9767
Score = 91.5 bits (100), Expect = 3e-13
Identities = 198/294 (67%), Gaps = 2/294 (1%)
Strand=Plus/Plus
Query 35327 ATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGAT 35386
||| | |||||| ||| ||||| || |||| | | ||||| |||| | | |
Sbjct 7758 ATAAAAATCTGGGACGGAAATGGAAGCCGCGAATATCTCGACAGCGTAGGGCTCTCACAC 7817
Query 35387 AGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAA 35446
| |||| || ||| | |||||||||||||| ||||||||||| ||||| || || ||
Sbjct 7818 CGCGCAGTCGGCGATCTAGGACCCGTATACGGCTTCCAATGGCGGCATTTCGGGGCAGAG 7877
Query 35447 TATGATACCTG-TTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACT 35505
|||| || || | ||||| || || ||||| | ||||||||||| | | |
Sbjct 7878 TATG-TAGATGCGAAGACGGATTACACAGGGAAGGGGGTCGATCAATTGGCAGAGGTGAT 7936
Query 35506 AAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTAT 35565
||| ||||| | || || ||||| || |||| || ||| || ||||||||
Sbjct 7937 TGAGAAGCTGAGGAACAACCCGTATGATCGACGGATCATCCTGAGTGCGTGGAATCCCGC 7996
Query 35566 GGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619
|||| | | | |||||| | || || || || ||| ||| || || || ||
Sbjct 7997 GGATTTGAAGATCATGGCTTTACCACCTTGTCATATGTTTGCGCAGTTCTACGT 8050
>seq4538
Length=19519
Score = 87.8 bits (96), Expect = 4e-12
Identities = 165/240 (69%), Gaps = 2/240 (1%)
Strand=Plus/Minus
Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845
|||| || ||||| |||| || || || || ||| | ||| |||||||||||
Sbjct 7021 CCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTGTCATAAATACCA 6962
Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGT-GTGACTGT 94904
|||||||| || || | | | | | ||||| || || || ||||| | | ||| ||
Sbjct 6961 TCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAGAGTTGTGCTTGTGGA-GT 6903
Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964
||| | ||| ||||| || || || |||||||| || | || ||||| | | ||
Sbjct 6902 ACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGTAAAGTATTTGCTGGACATCAAGTTGTA 6843
Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024
|| |||||| ||| | || | |||||||| || ||||| ||||||||||||||
Sbjct 6842 GGTCTCAATGGCAGCCTCAATATTATCACCGTGAATACCAACAGCAACACGCATAATCAT 6783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989523787215295
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |