Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 257 2e-63
seq678 120 4e-22
>seq4538
Length=19519
Score = 257 bits (284), Expect = 2e-63
Identities = 1325/2071 (64%), Gaps = 61/2071 (3%)
Strand=Plus/Minus
Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105
||||||||||| || || || || | | || || |||||||||||||| || || |||
Sbjct 8530 GTGAATTGAATAGGTGCTGAGGCAGCCATGGTTCGGAGATAGTACATTCCAGTCTTGAGA 8471
Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 62164
|| | |||| || ||||||||||| || | || || | || || | ||
Sbjct 8470 CCCAACTTCCAACCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 8412
Query 62165 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62224
||||| ||||| |||||| |||||| ||||| || || | || |||||||| | |
Sbjct 8411 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATCTGGAC 8352
Query 62225 GATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62284
||| || ||||| || ||||||| ||| || |||| ||| ||||| |||| |
Sbjct 8351 GATAGTACGTTGTGAGATCTCCCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGAT 8292
Query 62285 GTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341
||||| | || || || ||||||||||| | || || | ||||| || | |||
Sbjct 8291 GTTTGGAACATTTTGGATTGATCCACCATCAGCGATGATTCGGTTCTTCATGTTGTCAGA 8232
Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401
||| | | | || | | | || || ||||| || |||||||| |||||
Sbjct 8231 CCAAAGTCCCATATCAACAAGGTCCTTCAGAAGCCATGGGTTGACAACTTGGAACTCTCC 8172
Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTT-- 62459
|| | || | |||| ||| || || ||||| || || || |||| ||
Sbjct 8171 AGCAAGAACACGACGAGAGTAGATGTTGGAAGTATATGGCTC----GAAGCATTCGTTGA 8116
Query 62460 -CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62517
||||| ||||||| || ||||| |||||||| || || | ||||| || | ||
Sbjct 8115 ACCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAA 8056
Query 62518 GACCGTA-TGTTCTGATTTTAT-CTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTAC 62575
|||| | || | ||| | | ||| || | |||| | |||||| || | |||
Sbjct 8055 GACCATGCTGGGC-GATCTGTTGCTTCAAGCTAG-CCCAGTCCCAAAGGTCGGTAGGTGT 7998
Query 62576 AACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 62635
|||||| || || || ||| || ||| ||||||| ||
Sbjct 7997 CTTGCCCCACATGTCATATTGAAGCTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTC 7938
Query 62636 ATATGGTCCTTCCTTCTCAGCTAGTTT-ACAACTCGCCTCTAATGCACCGTAATAAATGG 62694
|||| ||| | ||| || || | || | || || ||| ||| ||| || |
Sbjct 7937 GTATGTTCCATGGGTCTTTGCCAGCTCGACGGATGCAGTCAAA-GCAGCGTGATAGATTG 7879
Query 62695 TTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGA 62754
| ||||| || | | || || | | || || || || || ||| | |||
Sbjct 7878 TCTCAAAAATTTGGATGTTGAGGTGCTTAGCCTCTGGCGACTCGAAAGGA-AGGCGAAGT 7820
Query 62755 G--AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62812
| || ||| || || || | ||||||||||||| | | || ||||| || | |||
Sbjct 7819 GCCAAGAAA-GCATCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAATT 7761
Query 62813 AGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62871
| |||| |||||||||| || || || || ||||| ||||| ||||| | ||
Sbjct 7760 -GCTCTTTCTTGCTTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTTCT 7702
Query 62872 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATCGCCCATCTATTA-- 62928
|||||| |||| | || || | || || | || ||| || | | ||| ||
Sbjct 7701 TGACAACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCAT 7642
Query 62929 CAA-ACATGTTCAATG--CAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCG 62985
||| | ||||| | | ||| ||||||| ||| || ||||| || |||| | | |
Sbjct 7641 CAACATATGTTGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATCTGG-TGCA 7583
Query 62986 CA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 63044
|| || | | ||||| ||||| || || | ||| || || | || | ||
Sbjct 7582 CAGTACTCAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTGG 7523
Query 63045 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63104
|| |||||| ||| || |||||||| || || ||||| || | || || || |||||
Sbjct 7522 TTGCTCTTTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGA 7463
Query 63105 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCT-TTC 63163
| ||| | ||| | | ||| | | ||||||| | || || | | | |||
Sbjct 7462 GCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAC---AGTCTTACGGCCCATGTTC 7406
Query 63164 TCTT--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221
|| |||||| |||||| || ||||| || || |||| | |||| | |
Sbjct 7405 TCAGCCTCGTATTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCA 7346
Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281
||||| || | || |||||||| | ||| || || | | || || ||||| ||
Sbjct 7345 GGACACTCGTTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAT 7286
Query 63282 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340
| ||| |||||||||||||| ||| || ||||| | | | || || |||||
Sbjct 7285 AAATCTGGAATCCAAAGAGC-ATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTG 7227
Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400
|||||| || || |||||| | | | ||||| ||||| || || | ||| |||||
Sbjct 7226 GTTCTTTCGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGC 7167
Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460
| | | ||||| || ||||| || |||||||| | ||||| |||||||| || ||||
Sbjct 7166 AAAAGCACCAGGACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAAC 7107
Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520
|| | ||| |||| ||| ||||| || | || || ||||| | || ||| ||||| |
Sbjct 7106 TCGAAGCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGT 7047
Query 63521 GGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576
|||||| || | || ||| ||||| || || || || | ||||| || | |
Sbjct 7046 GGCACGGATTCTGTGGAC--ATT--AAGACCGATACCACCAGCGTTCTTAGAAATCATAG 6991
Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636
|||| || || |||||||| || || || ||||| || || |||||| | || |
Sbjct 6990 CGCAAGTCTTCAAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGA 6931
Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696
|||| || | ||| | | ||| || ||| ||| | || ||||| ||||| |
Sbjct 6930 AACATGATGAGAGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGG 6871
Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTGA 63755
|||| |||| || | | ||||| |||||||| || | || ||| | || |
Sbjct 6870 TAAAGTATTTGCTGGACATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCG- 6812
Query 63756 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTT 63815
||||| || || || |||||||| | ||| || || || | ||| ||| ||| |
Sbjct 6811 TGAATACCAACAGCAACACGCATAATCATATGTTGTGGACGTTCGCAAATCTTGCCATCG 6752
Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGT 63873
| | | || ||| || | || || || || || || | ||| ||||| |
Sbjct 6751 AGACGGAGGAGATATGATCGCTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAA--T 6694
Query 63874 CTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGG 63933
| || ||||| | ||| | || ||||||| ||| || || | || | || |||
Sbjct 6693 CACGGTCGTACACAATGGCAGAGTTGAGCTCGGCCTCATGCTTCATGAC-ACATTCAT-A 6636
Query 63934 TAATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAA 63991
| | ||| || || || || | | || ||| |||||| ||||||| | ||||
Sbjct 6635 TGTTGCTTTGCTGATCATAGGTGACTCTCTCTTGTTTCGAGGATTGACATAGTGGTATAA 6576
Query 63992 ATCCTCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTA 64050
|| || || | | | ||| | || || || | |||||| || || || | || |
Sbjct 6575 GTCGGAAATAAC-GCTCGAGAATTGCTTCTTGGTCTGCTTGTGGAGGTTGGAAACTGCAA 6517
Query 64051 TTCTGGCGGCTAGAATGGCATAATCCGGATG 64081
|||| || || || ||||||||||| |||||
Sbjct 6516 TTCTTGCAGCGAGGATGGCATAATCGGGATG 6486
>seq678
Length=9679
Score = 120 bits (132), Expect = 4e-22
Identities = 334/512 (65%), Gaps = 3/512 (1%)
Strand=Plus/Minus
Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350
|||||||| ||| | ||||| || ||||| || || || ||||| | | || || ||
Sbjct 8428 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTC 8369
Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410
|||||||| || || || |||| ||| ||||||| || | | || | | |
Sbjct 8368 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGGGAAAGGAGA 8309
Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470
| | ||| || ||||| || || ||| ||||||| || ||||| || | |||
Sbjct 8308 AGGCGATCAGCAACGAACTCGATGTATTGCTTCATCAAGCCAGCGTTCATACCAAGGAGA 8249
Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530
| ||||||||| |||| | || || || ||||| || || | || || | |
Sbjct 8248 GCACAAGGAAGAGCCTCAGTCAAGAACTCCTGCTCAATCTCAACAGCCTCAGTGATGACA 8189
Query 33531 AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAA 33590
| || | | | || || | || | ||| || | | ||||| |||
Sbjct 8188 GCTTGGACAGCAGCCTTGCTTGGGCGGTGCTTGAGATGGGAGAAGAGGAGGCATGCAAAA 8129
Query 33591 TCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATT 33650
||| ||| ||||||||||| | || || ||||| || || || || || | |||
Sbjct 8128 TCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGACCAGCCATA 8069
Query 33651 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCT 33710
|| |||||||| || | |||||| ||||| ||||| || || ||||||||| || ||
Sbjct 8068 AGACCACGCTTCTTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAGATACCCTCA 8009
Query 33711 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTT 33767
|| ||||||||||||| ||| | | || | | | |||| || |||||
Sbjct 8008 ACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGACTCCTTGTCCTGGATCCAACGA 7949
Query 33768 TGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33799
|||||||||||||||||| || | |||||
Sbjct 7948 ACAGCCCAATCGGCCTTCTTCTTGATGCAAGG 7917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629780212452720
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