Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4538 257 2e-63 seq678 120 4e-22 >seq4538 Length=19519 Score = 257 bits (284), Expect = 2e-63 Identities = 1325/2071 (64%), Gaps = 61/2071 (3%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||||||||| || || || || | | || || |||||||||||||| || || ||| Sbjct 8530 GTGAATTGAATAGGTGCTGAGGCAGCCATGGTTCGGAGATAGTACATTCCAGTCTTGAGA 8471 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 62164 || | |||| || ||||||||||| || | || || | || || | || Sbjct 8470 CCCAACTTCCAACCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 8412 Query 62165 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62224 ||||| ||||| |||||| |||||| ||||| || || | || |||||||| | | Sbjct 8411 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATCTGGAC 8352 Query 62225 GATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62284 ||| || ||||| || ||||||| ||| || |||| ||| ||||| |||| | Sbjct 8351 GATAGTACGTTGTGAGATCTCCCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGAT 8292 Query 62285 GTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341 ||||| | || || || ||||||||||| | || || | ||||| || | ||| Sbjct 8291 GTTTGGAACATTTTGGATTGATCCACCATCAGCGATGATTCGGTTCTTCATGTTGTCAGA 8232 Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401 ||| | | | || | | | || || ||||| || |||||||| ||||| Sbjct 8231 CCAAAGTCCCATATCAACAAGGTCCTTCAGAAGCCATGGGTTGACAACTTGGAACTCTCC 8172 Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTT-- 62459 || | || | |||| ||| || || ||||| || || || |||| || Sbjct 8171 AGCAAGAACACGACGAGAGTAGATGTTGGAAGTATATGGCTC----GAAGCATTCGTTGA 8116 Query 62460 -CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62517 ||||| ||||||| || ||||| |||||||| || || | ||||| || | || Sbjct 8115 ACCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAA 8056 Query 62518 GACCGTA-TGTTCTGATTTTAT-CTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTAC 62575 |||| | || | ||| | | ||| || | |||| | |||||| || | ||| Sbjct 8055 GACCATGCTGGGC-GATCTGTTGCTTCAAGCTAG-CCCAGTCCCAAAGGTCGGTAGGTGT 7998 Query 62576 AACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 62635 |||||| || || || ||| || ||| ||||||| || Sbjct 7997 CTTGCCCCACATGTCATATTGAAGCTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTC 7938 Query 62636 ATATGGTCCTTCCTTCTCAGCTAGTTT-ACAACTCGCCTCTAATGCACCGTAATAAATGG 62694 |||| ||| | ||| || || | || | || || ||| ||| ||| || | Sbjct 7937 GTATGTTCCATGGGTCTTTGCCAGCTCGACGGATGCAGTCAAA-GCAGCGTGATAGATTG 7879 Query 62695 TTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGA 62754 | ||||| || | | || || | | || || || || || ||| | ||| Sbjct 7878 TCTCAAAAATTTGGATGTTGAGGTGCTTAGCCTCTGGCGACTCGAAAGGA-AGGCGAAGT 7820 Query 62755 G--AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62812 | || ||| || || || | ||||||||||||| | | || ||||| || | ||| Sbjct 7819 GCCAAGAAA-GCATCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAATT 7761 Query 62813 AGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62871 | |||| |||||||||| || || || || ||||| ||||| ||||| | || Sbjct 7760 -GCTCTTTCTTGCTTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTTCT 7702 Query 62872 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATCGCCCATCTATTA-- 62928 |||||| |||| | || || | || || | || ||| || | | ||| || Sbjct 7701 TGACAACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCAT 7642 Query 62929 CAA-ACATGTTCAATG--CAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCG 62985 ||| | ||||| | | ||| ||||||| ||| || ||||| || |||| | | | Sbjct 7641 CAACATATGTTGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATCTGG-TGCA 7583 Query 62986 CA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 63044 || || | | ||||| ||||| || || | ||| || || | || | || Sbjct 7582 CAGTACTCAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTGG 7523 Query 63045 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63104 || |||||| ||| || |||||||| || || ||||| || | || || || ||||| Sbjct 7522 TTGCTCTTTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGA 7463 Query 63105 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCT-TTC 63163 | ||| | ||| | | ||| | | ||||||| | || || | | | ||| Sbjct 7462 GCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAC---AGTCTTACGGCCCATGTTC 7406 Query 63164 TCTT--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221 || |||||| |||||| || ||||| || || |||| | |||| | | Sbjct 7405 TCAGCCTCGTATTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCA 7346 Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 ||||| || | || |||||||| | ||| || || | | || || ||||| || Sbjct 7345 GGACACTCGTTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAT 7286 Query 63282 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 | ||| |||||||||||||| ||| || ||||| | | | || || ||||| Sbjct 7285 AAATCTGGAATCCAAAGAGC-ATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTG 7227 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 |||||| || || |||||| | | | ||||| ||||| || || | ||| ||||| Sbjct 7226 GTTCTTTCGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGC 7167 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | | ||||| || ||||| || |||||||| | ||||| |||||||| || |||| Sbjct 7166 AAAAGCACCAGGACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAAC 7107 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 || | ||| |||| ||| ||||| || | || || ||||| | || ||| ||||| | Sbjct 7106 TCGAAGCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGT 7047 Query 63521 GGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576 |||||| || | || ||| ||||| || || || || | ||||| || | | Sbjct 7046 GGCACGGATTCTGTGGAC--ATT--AAGACCGATACCACCAGCGTTCTTAGAAATCATAG 6991 Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636 |||| || || |||||||| || || || ||||| || || |||||| | || | Sbjct 6990 CGCAAGTCTTCAAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGA 6931 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 |||| || | ||| | | ||| || ||| ||| | || ||||| ||||| | Sbjct 6930 AACATGATGAGAGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGG 6871 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTGA 63755 |||| |||| || | | ||||| |||||||| || | || ||| | || | Sbjct 6870 TAAAGTATTTGCTGGACATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCG- 6812 Query 63756 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTT 63815 ||||| || || || |||||||| | ||| || || || | ||| ||| ||| | Sbjct 6811 TGAATACCAACAGCAACACGCATAATCATATGTTGTGGACGTTCGCAAATCTTGCCATCG 6752 Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGT 63873 | | | || ||| || | || || || || || || | ||| ||||| | Sbjct 6751 AGACGGAGGAGATATGATCGCTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAA--T 6694 Query 63874 CTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGG 63933 | || ||||| | ||| | || ||||||| ||| || || | || | || ||| Sbjct 6693 CACGGTCGTACACAATGGCAGAGTTGAGCTCGGCCTCATGCTTCATGAC-ACATTCAT-A 6636 Query 63934 TAATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAA 63991 | | ||| || || || || | | || ||| |||||| ||||||| | |||| Sbjct 6635 TGTTGCTTTGCTGATCATAGGTGACTCTCTCTTGTTTCGAGGATTGACATAGTGGTATAA 6576 Query 63992 ATCCTCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTA 64050 || || || | | | ||| | || || || | |||||| || || || | || | Sbjct 6575 GTCGGAAATAAC-GCTCGAGAATTGCTTCTTGGTCTGCTTGTGGAGGTTGGAAACTGCAA 6517 Query 64051 TTCTGGCGGCTAGAATGGCATAATCCGGATG 64081 |||| || || || ||||||||||| ||||| Sbjct 6516 TTCTTGCAGCGAGGATGGCATAATCGGGATG 6486 >seq678 Length=9679 Score = 120 bits (132), Expect = 4e-22 Identities = 334/512 (65%), Gaps = 3/512 (1%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| ||| | ||||| || ||||| || || || ||||| | | || || || Sbjct 8428 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTC 8369 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 |||||||| || || || |||| ||| ||||||| || | | || | | | Sbjct 8368 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGGGAAAGGAGA 8309 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 | | ||| || ||||| || || ||| ||||||| || ||||| || | ||| Sbjct 8308 AGGCGATCAGCAACGAACTCGATGTATTGCTTCATCAAGCCAGCGTTCATACCAAGGAGA 8249 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 | ||||||||| |||| | || || || ||||| || || | || || | | Sbjct 8248 GCACAAGGAAGAGCCTCAGTCAAGAACTCCTGCTCAATCTCAACAGCCTCAGTGATGACA 8189 Query 33531 AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAA 33590 | || | | | || || | || | ||| || | | ||||| ||| Sbjct 8188 GCTTGGACAGCAGCCTTGCTTGGGCGGTGCTTGAGATGGGAGAAGAGGAGGCATGCAAAA 8129 Query 33591 TCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATT 33650 ||| ||| ||||||||||| | || || ||||| || || || || || | ||| Sbjct 8128 TCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGACCAGCCATA 8069 Query 33651 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCT 33710 || |||||||| || | |||||| ||||| ||||| || || ||||||||| || || Sbjct 8068 AGACCACGCTTCTTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAGATACCCTCA 8009 Query 33711 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTT 33767 || ||||||||||||| ||| | | || | | | |||| || ||||| Sbjct 8008 ACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGACTCCTTGTCCTGGATCCAACGA 7949 Query 33768 TGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33799 |||||||||||||||||| || | ||||| Sbjct 7948 ACAGCCCAATCGGCCTTCTTCTTGATGCAAGG 7917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629780212452720