Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 98.7 9e-16
>seq4538
Length=19519
Score = 98.7 bits (108), Expect = 9e-16
Identities = 348/543 (64%), Gaps = 8/543 (1%)
Strand=Plus/Minus
Query 38011 TTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTT 38070
||||| || || | ||| |||||||| || | ||| | ||| || | ||| ||
Sbjct 7306 TTTTCAACACGCTTCATGAATAAATCTGGAATCCAAAGAGCATAGAAAAGATCACGGGCG 7247
Query 38071 CTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGC 38130
| ||||| || || ||||||| | | || || || || | ||||||||||
Sbjct 7246 CGGACCTCTTCCTTTCCGTGGTTCTTTCGGAGGTCAAGGAACTCAAAGACATCAGCGTGC 7187
Query 38131 CATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATAT 38190
||||| || | || || | | || || || | || | ||| ||||||| || ||||
Sbjct 7186 CATGGCTCAAGGTAGATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCAACATAT 7127
Query 38191 CTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATA 38250
|| | ||||| || | | || | |||||| || || || || || || |||||| ||
Sbjct 7126 CTGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTA 7067
Query 38251 CCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAAT----CCTATTCCACC 38306
|| | || || | || | || || || | | |||| | || || |||||
Sbjct 7066 CCAGCAATGTAGGCTCCAGTGGCACGGAT----TCTGTGGACATTAAGACCGATACCACC 7011
Query 38307 TGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTC 38366
|| | || || || | |||||| || || || ||| | ||||| || || |||||
Sbjct 7010 AGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTGTCATAAATACCATCAATGCTGTC 6951
Query 38367 ATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAA 38426
||||| || | | ||||| || | ||| | |||||| || || |||
Sbjct 6950 CTCCTTCATGTCGATGAGGAAACATGATGAGAGTTGTGCTTGTGGAGTACCAGCAGCAAA 6891
Query 38427 TAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTAC 38486
| ||| ||||| || || | || |||| |||| | || || || || || |
Sbjct 6890 AAGTGTTGGAGAGGCGTGGGTAAAGTATTTGCTGGACATCAAGTTGTAGGTCTCAATGGC 6831
Query 38487 ATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCT 38546
| | || |||| | | ||||||||||| | || || | ||| | |||||||||||| |
Sbjct 6830 AGCCTCAATATTATCACCGTGAATACCAACAGCAACACGCATAATCATATGTTGTGGACG 6771
Query 38547 TTC 38549
|||
Sbjct 6770 TTC 6768
Score = 82.4 bits (90), Expect = 7e-11
Identities = 153/222 (69%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
||||| ||||||| ||||| ||| || | | |||| | ||| |||||||||||
Sbjct 8536 TCAACGGTGAATTGAATAGGTGCTGAGGCAGCCATGGTTCGGAGATAGTACATTCCAGTC 8477
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTAT-GTAGGATT 36908
|| || ||||| |||| || |||||||||||||| | | || | || || || |
Sbjct 8476 TTGAGACCCAACTTCCAACCTGCGAAATGCATACTGGTGA-TCTTACCCATGGTTGGGTC 8418
Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968
| || | || ||||||||||| |||||| || || ||||| | || || |||||
Sbjct 8417 CTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCAT 8358
Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010
| | ||| ||| || ||||||||||| || || ||
Sbjct 8357 CTGGACGATAGTACGTTGTGAGATCTCCCAAACAGTCTTGTA 8316
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468496987196560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |