Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4538 98.7 9e-16 >seq4538 Length=19519 Score = 98.7 bits (108), Expect = 9e-16 Identities = 348/543 (64%), Gaps = 8/543 (1%) Strand=Plus/Minus Query 38011 TTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTT 38070 ||||| || || | ||| |||||||| || | ||| | ||| || | ||| || Sbjct 7306 TTTTCAACACGCTTCATGAATAAATCTGGAATCCAAAGAGCATAGAAAAGATCACGGGCG 7247 Query 38071 CTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGC 38130 | ||||| || || ||||||| | | || || || || | |||||||||| Sbjct 7246 CGGACCTCTTCCTTTCCGTGGTTCTTTCGGAGGTCAAGGAACTCAAAGACATCAGCGTGC 7187 Query 38131 CATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATAT 38190 ||||| || | || || | | || || || | || | ||| ||||||| || |||| Sbjct 7186 CATGGCTCAAGGTAGATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCAACATAT 7127 Query 38191 CTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATA 38250 || | ||||| || | | || | |||||| || || || || || || |||||| || Sbjct 7126 CTGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTA 7067 Query 38251 CCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAAT----CCTATTCCACC 38306 || | || || | || | || || || | | |||| | || || ||||| Sbjct 7066 CCAGCAATGTAGGCTCCAGTGGCACGGAT----TCTGTGGACATTAAGACCGATACCACC 7011 Query 38307 TGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTC 38366 || | || || || | |||||| || || || ||| | ||||| || || ||||| Sbjct 7010 AGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTGTCATAAATACCATCAATGCTGTC 6951 Query 38367 ATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAA 38426 ||||| || | | ||||| || | ||| | |||||| || || ||| Sbjct 6950 CTCCTTCATGTCGATGAGGAAACATGATGAGAGTTGTGCTTGTGGAGTACCAGCAGCAAA 6891 Query 38427 TAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTAC 38486 | ||| ||||| || || | || |||| |||| | || || || || || | Sbjct 6890 AAGTGTTGGAGAGGCGTGGGTAAAGTATTTGCTGGACATCAAGTTGTAGGTCTCAATGGC 6831 Query 38487 ATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCT 38546 | | || |||| | | ||||||||||| | || || | ||| | |||||||||||| | Sbjct 6830 AGCCTCAATATTATCACCGTGAATACCAACAGCAACACGCATAATCATATGTTGTGGACG 6771 Query 38547 TTC 38549 ||| Sbjct 6770 TTC 6768 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| ||||||| ||||| ||| || | | |||| | ||| ||||||||||| Sbjct 8536 TCAACGGTGAATTGAATAGGTGCTGAGGCAGCCATGGTTCGGAGATAGTACATTCCAGTC 8477 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTAT-GTAGGATT 36908 || || ||||| |||| || |||||||||||||| | | || | || || || | Sbjct 8476 TTGAGACCCAACTTCCAACCTGCGAAATGCATACTGGTGA-TCTTACCCATGGTTGGGTC 8418 Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968 | || | || ||||||||||| |||||| || || ||||| | || || ||||| Sbjct 8417 CTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCAT 8358 Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010 | | ||| ||| || ||||||||||| || || || Sbjct 8357 CTGGACGATAGTACGTTGTGAGATCTCCCAAACAGTCTTGTA 8316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468496987196560