Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 232 9e-56
seq678 111 2e-19
>seq4538
Length=19519
Score = 232 bits (256), Expect = 9e-56
Identities = 1320/2072 (64%), Gaps = 63/2072 (3%)
Strand=Plus/Minus
Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898
||||||||||| || || || || | | || || |||||||||||||| || || |||
Sbjct 8530 GTGAATTGAATAGGTGCTGAGGCAGCCATGGTTCGGAGATAGTACATTCCAGTCTTGAGA 8471
Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 64957
|| | |||| || ||||||||||| || | || || | || || | ||
Sbjct 8470 CCCAACTTCCAACCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 8412
Query 64958 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 65017
||||| ||||| |||||| |||||| ||||| || || | || |||||||| | |
Sbjct 8411 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATCTGGAC 8352
Query 65018 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 65077
||| || ||||| || ||||||| ||| || |||| ||| ||||| |||| |
Sbjct 8351 GATAGTACGTTGTGAGATCTCCCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGAT 8292
Query 65078 GTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 65134
||||| | || || || ||||||||||| || || || | ||||| || | |||
Sbjct 8291 GTTTGGAACATTTTGGATTGATCCACCATCAGCGATGATTCGGTTCTTCATGTTGTCAGA 8232
Query 65135 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 65194
||| | | | || | | | || || || || || ||||| || |||||
Sbjct 8231 CCAAAGTCCCATATCAACAAGGTCCTTCAGAAGCCATGGGTTGACAACTTGGAACTCTCC 8172
Query 65195 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT-- 65252
|| | || | |||| ||| || || ||||| || || | || |||| ||
Sbjct 8171 AGCAAGAACACGACGAGAGTAGATGTTGGAAGTATATGGCTCGA-AG---CATTCGTTGA 8116
Query 65253 -CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 65310
||||| ||||||| || ||||| |||||||| || || | ||||| || | ||
Sbjct 8115 ACCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAA 8056
Query 65311 GACCGTA-TGTTCTGATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCGACGGTAC 65368
|||| | || | ||| | | || | || | |||| | |||||| || | |||
Sbjct 8055 GACCATGCTGGGC-GATCTGTTGCTTCA-AGCTAGCCCAGTCCCAAAGGTCGGTAGGTGT 7998
Query 65369 AACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 65428
||| || || || ||| || ||| ||||||| ||
Sbjct 7997 CTTGCCCCACATGTCATATTGAAGCTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTC 7938
Query 65429 GTATGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGG 65487
||||| ||| | ||| || || || || | || || ||| ||| ||| || |
Sbjct 7937 GTATGTTCCATGGGTCTTTGCCAGCTCGACGGATGCAGTCAAA-GCAGCGTGATAGATTG 7879
Query 65488 TTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAG 65546
| || || || | | || || | | || || ||| | || || ||| | |||
Sbjct 7878 TCTCAAAAATTTGGATGTTGAGGTGCTTAGCCTCT-GGCGACTCGAAAGGA-AGGCGAAG 7821
Query 65547 AG--AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 65604
| || ||| || || || | ||||||||||||| | | || ||||| || | ||
Sbjct 7820 TGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAAT 7762
Query 65605 TAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 65663
| | |||| |||||||||| || || || || ||||| ||||| ||||| | ||
Sbjct 7761 T-GCTCTTTCTTGCTTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTTC 7703
Query 65664 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT----CGCTCATCTAT 65719
|||||| |||| | || || | || || | || ||| | || || | |
Sbjct 7702 TTGACAACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCA 7643
Query 65720 TACAAACATGTTCAATG--CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 65777
| | | ||||| | | ||| ||||||| ||| |||||||| || |||| | | |
Sbjct 7642 TCAACATATGTTGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATCTGG-TGC 7584
Query 65778 GCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 65836
|| || | | ||||| ||||| || || | |||||| || | || | ||
Sbjct 7583 ACAGTACTCAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTG 7524
Query 65837 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 65896
|| |||||| ||| || |||||||| || || ||||| || | || || || ||||
Sbjct 7523 GTTGCTCTTTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTG 7464
Query 65897 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT-TT 65955
|| ||| | ||| | | ||| | | ||||||| | || || | | | ||
Sbjct 7463 AGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAC---AGTCTTACGGCCCATGTT 7407
Query 65956 CTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 66013
||| |||||| |||||| || ||||| || || |||| | |||| ||
Sbjct 7406 CTCAGCCTCGTATTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACC 7347
Query 66014 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 66073
|||||| || | || |||||||| | ||| || || | | || || ||||| ||
Sbjct 7346 AGGACACTCGTTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAA 7287
Query 66074 GAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTG 66132
| ||| |||||||||||||| ||| || | ||| | || | || || |||||
Sbjct 7286 TAAATCTGGAATCCAAAGAGC-ATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGT 7228
Query 66133 TATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGG 66192
|||||| || || |||||| | | | |||| ||||| || || | ||| ||||
Sbjct 7227 GGTTCTTTCGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGG 7168
Query 66193 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 66252
| | | | ||||| || ||||| || |||||||| | ||||| |||||||| || |||
Sbjct 7167 CAAAAGCACCAGGACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAA 7108
Query 66253 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 66312
||| | ||| |||| ||| || ||||| | || || || || | || ||| ||||
Sbjct 7107 CTCGAAGCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAG 7048
Query 66313 TTGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 66368
| ||||| || | || ||| ||||| || || || || | ||||| || |
Sbjct 7047 TGGCACGGATTCTGTGGAC--ATT--AAGACCGATACCACCAGCGTTCTTAGAAATCATA 6992
Query 66369 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 66428
||||| || || || ||||| || || || || || || ||| |||||| | ||
Sbjct 6991 GCGCAAGTCTTCAAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGG 6932
Query 66429 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 66488
||||| || | ||| | ||| || ||| ||| | || ||||| |||||
Sbjct 6931 AAACATGATGAGAGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGG 6872
Query 66489 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTG 66547
||||| |||| || | | ||||| |||||||| || | || ||| | || |
Sbjct 6871 GTAAAGTATTTGCTGGACATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCG 6812
Query 66548 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 66607
||||| || || || |||||||| | ||| || || || | ||| |||||| |
Sbjct 6811 -TGAATACCAACAGCAACACGCATAATCATATGTTGTGGACGTTCGCAAATCTTGCCATC 6753
Query 66608 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAG 66665
| | | || ||| || | || || || || || || | ||| |||||
Sbjct 6752 GAGACGGAGGAGATATGATCGCTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAA-- 6695
Query 66666 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATG 66725
|| || ||||| | ||| | |||||||| | ||| || || | || |||| |||
Sbjct 6694 TCACGGTCGTACACAATGGCAGAGTTGAGCTCGGCCTCATGCTTCATGAC-ACATTCAT- 6637
Query 66726 GTAATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATA 66783
| | ||| || || || || | | || ||| |||||||||||||| | |||
Sbjct 6636 ATGTTGCTTTGCTGATCATAGGTGACTCTCTCTTGTTTCGAGGATTGACATAGTGGTATA 6577
Query 66784 AATCCTCCATCACTTCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 66842
| || || || | | | ||| | || || || | ||||| || || || || ||
Sbjct 6576 AGTCGGAAATAAC-GCTCGAGAATTGCTTCTTGGTCTGCTTGTGGAGGTTGGAAACTGCA 6518
Query 66843 ATTCTAGCGGCTATAATGGCATAATCCGGATG 66874
||||| || || | ||||||||||| |||||
Sbjct 6517 ATTCTTGCAGCGAGGATGGCATAATCGGGATG 6486
>seq678
Length=9679
Score = 111 bits (122), Expect = 2e-19
Identities = 332/512 (65%), Gaps = 3/512 (1%)
Strand=Plus/Minus
Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926
|||||||| ||| | ||||| || ||||| || || || || || | | || || ||
Sbjct 8428 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTC 8369
Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986
|||||||| |||||||| ||| ||| || |||| || | | || | | |
Sbjct 8368 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGGGAAAGGAGA 8309
Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046
| | ||| || || || || || ||| ||||||| || ||||| || | ||
Sbjct 8308 AGGCGATCAGCAACGAACTCGATGTATTGCTTCATCAAGCCAGCGTTCATACCAAGGAGA 8249
Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106
| ||||||||| |||| | || || || ||||| || || || || || | |
Sbjct 8248 GCACAAGGAAGAGCCTCAGTCAAGAACTCCTGCTCAATCTCAACAGCCTCAGTGATGACA 8189
Query 36107 GATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 36166
| | || | | | || || | | | | ||| || | | ||||| |||
Sbjct 8188 GCTTGGACAGCAGCCTTGCTTGGGCGGTGCTTGAGATGGGAGAAGAGGAGGCATGCAAAA 8129
Query 36167 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 36226
||| ||| ||||||||||| | || || |||||||| || || || || | |||
Sbjct 8128 TCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGACCAGCCATA 8069
Query 36227 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 36286
|| |||||||| || | |||||| ||||| || || || ||| |||||| || || ||
Sbjct 8068 AGACCACGCTTCTTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAGATACCCTCA 8009
Query 36287 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTT 36343
|| || |||||||||| ||| | | || | | | |||| || |||||
Sbjct 8008 ACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGACTCCTTGTCCTGGATCCAACGA 7949
Query 36344 TGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375
|||||||||||||||||| || | |||||
Sbjct 7948 ACAGCCCAATCGGCCTTCTTCTTGATGCAAGG 7917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658133729217160
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