Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4538 232 9e-56 seq678 111 2e-19 >seq4538 Length=19519 Score = 232 bits (256), Expect = 9e-56 Identities = 1320/2072 (64%), Gaps = 63/2072 (3%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||||||||| || || || || | | || || |||||||||||||| || || ||| Sbjct 8530 GTGAATTGAATAGGTGCTGAGGCAGCCATGGTTCGGAGATAGTACATTCCAGTCTTGAGA 8471 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 64957 || | |||| || ||||||||||| || | || || | || || | || Sbjct 8470 CCCAACTTCCAACCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 8412 Query 64958 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 65017 ||||| ||||| |||||| |||||| ||||| || || | || |||||||| | | Sbjct 8411 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATCTGGAC 8352 Query 65018 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 65077 ||| || ||||| || ||||||| ||| || |||| ||| ||||| |||| | Sbjct 8351 GATAGTACGTTGTGAGATCTCCCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGAT 8292 Query 65078 GTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 65134 ||||| | || || || ||||||||||| || || || | ||||| || | ||| Sbjct 8291 GTTTGGAACATTTTGGATTGATCCACCATCAGCGATGATTCGGTTCTTCATGTTGTCAGA 8232 Query 65135 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 65194 ||| | | | || | | | || || || || || ||||| || ||||| Sbjct 8231 CCAAAGTCCCATATCAACAAGGTCCTTCAGAAGCCATGGGTTGACAACTTGGAACTCTCC 8172 Query 65195 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT-- 65252 || | || | |||| ||| || || ||||| || || | || |||| || Sbjct 8171 AGCAAGAACACGACGAGAGTAGATGTTGGAAGTATATGGCTCGA-AG---CATTCGTTGA 8116 Query 65253 -CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 65310 ||||| ||||||| || ||||| |||||||| || || | ||||| || | || Sbjct 8115 ACCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAA 8056 Query 65311 GACCGTA-TGTTCTGATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCGACGGTAC 65368 |||| | || | ||| | | || | || | |||| | |||||| || | ||| Sbjct 8055 GACCATGCTGGGC-GATCTGTTGCTTCA-AGCTAGCCCAGTCCCAAAGGTCGGTAGGTGT 7998 Query 65369 AACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 65428 ||| || || || ||| || ||| ||||||| || Sbjct 7997 CTTGCCCCACATGTCATATTGAAGCTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTC 7938 Query 65429 GTATGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGG 65487 ||||| ||| | ||| || || || || | || || ||| ||| ||| || | Sbjct 7937 GTATGTTCCATGGGTCTTTGCCAGCTCGACGGATGCAGTCAAA-GCAGCGTGATAGATTG 7879 Query 65488 TTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAG 65546 | || || || | | || || | | || || ||| | || || ||| | ||| Sbjct 7878 TCTCAAAAATTTGGATGTTGAGGTGCTTAGCCTCT-GGCGACTCGAAAGGA-AGGCGAAG 7821 Query 65547 AG--AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 65604 | || ||| || || || | ||||||||||||| | | || ||||| || | || Sbjct 7820 TGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAAT 7762 Query 65605 TAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 65663 | | |||| |||||||||| || || || || ||||| ||||| ||||| | || Sbjct 7761 T-GCTCTTTCTTGCTTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTTC 7703 Query 65664 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT----CGCTCATCTAT 65719 |||||| |||| | || || | || || | || ||| | || || | | Sbjct 7702 TTGACAACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCA 7643 Query 65720 TACAAACATGTTCAATG--CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 65777 | | | ||||| | | ||| ||||||| ||| |||||||| || |||| | | | Sbjct 7642 TCAACATATGTTGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATCTGG-TGC 7584 Query 65778 GCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 65836 || || | | ||||| ||||| || || | |||||| || | || | || Sbjct 7583 ACAGTACTCAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTG 7524 Query 65837 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 65896 || |||||| ||| || |||||||| || || ||||| || | || || || |||| Sbjct 7523 GTTGCTCTTTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTG 7464 Query 65897 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT-TT 65955 || ||| | ||| | | ||| | | ||||||| | || || | | | || Sbjct 7463 AGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAC---AGTCTTACGGCCCATGTT 7407 Query 65956 CTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 66013 ||| |||||| |||||| || ||||| || || |||| | |||| || Sbjct 7406 CTCAGCCTCGTATTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACC 7347 Query 66014 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 66073 |||||| || | || |||||||| | ||| || || | | || || ||||| || Sbjct 7346 AGGACACTCGTTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAA 7287 Query 66074 GAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTG 66132 | ||| |||||||||||||| ||| || | ||| | || | || || ||||| Sbjct 7286 TAAATCTGGAATCCAAAGAGC-ATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGT 7228 Query 66133 TATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGG 66192 |||||| || || |||||| | | | |||| ||||| || || | ||| |||| Sbjct 7227 GGTTCTTTCGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGG 7168 Query 66193 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 66252 | | | | ||||| || ||||| || |||||||| | ||||| |||||||| || ||| Sbjct 7167 CAAAAGCACCAGGACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAA 7108 Query 66253 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 66312 ||| | ||| |||| ||| || ||||| | || || || || | || ||| |||| Sbjct 7107 CTCGAAGCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAG 7048 Query 66313 TTGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 66368 | ||||| || | || ||| ||||| || || || || | ||||| || | Sbjct 7047 TGGCACGGATTCTGTGGAC--ATT--AAGACCGATACCACCAGCGTTCTTAGAAATCATA 6992 Query 66369 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 66428 ||||| || || || ||||| || || || || || || ||| |||||| | || Sbjct 6991 GCGCAAGTCTTCAAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGG 6932 Query 66429 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 66488 ||||| || | ||| | ||| || ||| ||| | || ||||| ||||| Sbjct 6931 AAACATGATGAGAGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGG 6872 Query 66489 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTG 66547 ||||| |||| || | | ||||| |||||||| || | || ||| | || | Sbjct 6871 GTAAAGTATTTGCTGGACATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCG 6812 Query 66548 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 66607 ||||| || || || |||||||| | ||| || || || | ||| |||||| | Sbjct 6811 -TGAATACCAACAGCAACACGCATAATCATATGTTGTGGACGTTCGCAAATCTTGCCATC 6753 Query 66608 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAG 66665 | | | || ||| || | || || || || || || | ||| ||||| Sbjct 6752 GAGACGGAGGAGATATGATCGCTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAA-- 6695 Query 66666 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATG 66725 || || ||||| | ||| | |||||||| | ||| || || | || |||| ||| Sbjct 6694 TCACGGTCGTACACAATGGCAGAGTTGAGCTCGGCCTCATGCTTCATGAC-ACATTCAT- 6637 Query 66726 GTAATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATA 66783 | | ||| || || || || | | || ||| |||||||||||||| | ||| Sbjct 6636 ATGTTGCTTTGCTGATCATAGGTGACTCTCTCTTGTTTCGAGGATTGACATAGTGGTATA 6577 Query 66784 AATCCTCCATCACTTCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 66842 | || || || | | | ||| | || || || | ||||| || || || || || Sbjct 6576 AGTCGGAAATAAC-GCTCGAGAATTGCTTCTTGGTCTGCTTGTGGAGGTTGGAAACTGCA 6518 Query 66843 ATTCTAGCGGCTATAATGGCATAATCCGGATG 66874 ||||| || || | ||||||||||| ||||| Sbjct 6517 ATTCTTGCAGCGAGGATGGCATAATCGGGATG 6486 >seq678 Length=9679 Score = 111 bits (122), Expect = 2e-19 Identities = 332/512 (65%), Gaps = 3/512 (1%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 |||||||| ||| | ||||| || ||||| || || || || || | | || || || Sbjct 8428 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTC 8369 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 |||||||| |||||||| ||| ||| || |||| || | | || | | | Sbjct 8368 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGGGAAAGGAGA 8309 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 | | ||| || || || || || ||| ||||||| || ||||| || | || Sbjct 8308 AGGCGATCAGCAACGAACTCGATGTATTGCTTCATCAAGCCAGCGTTCATACCAAGGAGA 8249 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 | ||||||||| |||| | || || || ||||| || || || || || | | Sbjct 8248 GCACAAGGAAGAGCCTCAGTCAAGAACTCCTGCTCAATCTCAACAGCCTCAGTGATGACA 8189 Query 36107 GATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 36166 | | || | | | || || | | | | ||| || | | ||||| ||| Sbjct 8188 GCTTGGACAGCAGCCTTGCTTGGGCGGTGCTTGAGATGGGAGAAGAGGAGGCATGCAAAA 8129 Query 36167 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 36226 ||| ||| ||||||||||| | || || |||||||| || || || || | ||| Sbjct 8128 TCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGACCAGCCATA 8069 Query 36227 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 36286 || |||||||| || | |||||| ||||| || || || ||| |||||| || || || Sbjct 8068 AGACCACGCTTCTTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAGATACCCTCA 8009 Query 36287 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTT 36343 || || |||||||||| ||| | | || | | | |||| || ||||| Sbjct 8008 ACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGACTCCTTGTCCTGGATCCAACGA 7949 Query 36344 TGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375 |||||||||||||||||| || | ||||| Sbjct 7948 ACAGCCCAATCGGCCTTCTTCTTGATGCAAGG 7917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658133729217160