Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_003494.1
Length=111362
Score E
Sequences producing significant alignments: (Bits) Value
seq678 125 5e-24
>seq678
Length=9679
Score = 125 bits (138), Expect = 5e-24
Identities = 282/422 (67%), Gaps = 4/422 (1%)
Strand=Plus/Plus
Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799
|||||| | |||||||| |||||||| || || | ||| ||| || || || ||||
Sbjct 7985 ACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTTCGCATCCAT 8044
Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859
|| ||| ||||||| ||| || ||| | || | | || ||||||||||||||
Sbjct 8045 CTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACGAGTTGATCTC 8104
Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAA--AC 22917
||||||||| ||||| ||| || ||||| || | || || | || ||| ||
Sbjct 8105 CCGTGACGAGGGTCTCCACACCGATTTTGCATGCCTCCTCTT--CTCCCATCTCAAGCAC 8162
Query 22918 AAACCGTGTCAGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCT 22977
|| | ||| | || || |||| |||| || ||||| |||||| ||
Sbjct 8163 CGCCCAAGCAAGGCTGCTGTCCAAGCTGTCATCACTGAGGCTGTTGAGATTGAGCAGGAG 8222
Query 22978 TTCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTG 23037
||||| ||||| || | || ||||||||||| || | |||| |
Sbjct 8223 TTCTTGACTGAGGCTCTTCCTTGTGCTCTCCTTGGTATGAACGCTGGCTTGATGAAGCAA 8282
Query 23038 TACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAAC 23097
||||| |||| ||||| |||||||| ||| | |||| || ||| ||| | || ||
Sbjct 8283 TACATCGAGTTCGTTGCTGATCGCCTTCTCCTTTCCCTCGGCAATGAGAAGGTTTACAAG 8342
Query 23098 GTTGCCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTT 23157
|||||||| ||||| || |||||||| ||||| ||| || || || ||||||||
Sbjct 8343 GTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGAAAGACCAACTTCTTC 8402
Query 23158 GA 23159
||
Sbjct 8403 GA 8404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356212981755847
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |