Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq678 125 5e-24 >seq678 Length=9679 Score = 125 bits (138), Expect = 5e-24 Identities = 282/422 (67%), Gaps = 4/422 (1%) Strand=Plus/Plus Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799 |||||| | |||||||| |||||||| || || | ||| ||| || || || |||| Sbjct 7985 ACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTTCGCATCCAT 8044 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 || ||| ||||||| ||| || ||| | || | | || |||||||||||||| Sbjct 8045 CTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACGAGTTGATCTC 8104 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAA--AC 22917 ||||||||| ||||| ||| || ||||| || | || || | || ||| || Sbjct 8105 CCGTGACGAGGGTCTCCACACCGATTTTGCATGCCTCCTCTT--CTCCCATCTCAAGCAC 8162 Query 22918 AAACCGTGTCAGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCT 22977 || | ||| | || || |||| |||| || ||||| |||||| || Sbjct 8163 CGCCCAAGCAAGGCTGCTGTCCAAGCTGTCATCACTGAGGCTGTTGAGATTGAGCAGGAG 8222 Query 22978 TTCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTG 23037 ||||| ||||| || | || ||||||||||| || | |||| | Sbjct 8223 TTCTTGACTGAGGCTCTTCCTTGTGCTCTCCTTGGTATGAACGCTGGCTTGATGAAGCAA 8282 Query 23038 TACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAAC 23097 ||||| |||| ||||| |||||||| ||| | |||| || ||| ||| | || || Sbjct 8283 TACATCGAGTTCGTTGCTGATCGCCTTCTCCTTTCCCTCGGCAATGAGAAGGTTTACAAG 8342 Query 23098 GTTGCCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTT 23157 |||||||| ||||| || |||||||| ||||| ||| || || || |||||||| Sbjct 8343 GTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGAAAGACCAACTTCTTC 8402 Query 23158 GA 23159 || Sbjct 8403 GA 8404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356212981755847