Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 289 4e-73
seq678 123 4e-23
>seq4538
Length=19519
Score = 289 bits (320), Expect = 4e-73
Identities = 1339/2074 (65%), Gaps = 67/2074 (3%)
Strand=Plus/Minus
Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777
||||||||||| || || || || | | || || |||||||||||||| || || |||
Sbjct 8530 GTGAATTGAATAGGTGCTGAGGCAGCCATGGTTCGGAGATAGTACATTCCAGTCTTGAGA 8471
Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 78836
|| | |||| || |||||||||||| || | || || | || || | ||
Sbjct 8470 CCCAACTTCCAACCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 8412
Query 78837 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 78896
||||| ||||| |||||| |||||| ||||| || || | || |||||||| | |
Sbjct 8411 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATCTGGAC 8352
Query 78897 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 78956
||| || ||||| || ||||||| ||| || |||| ||| ||||| |||| |
Sbjct 8351 GATAGTACGTTGTGAGATCTCCCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGAT 8292
Query 78957 GTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013
||||| | || || || ||||||||||| || || || | ||||| || | |||
Sbjct 8291 GTTTGGAACATTTTGGATTGATCCACCATCAGCGATGATTCGGTTCTTCATGTTGTCAGA 8232
Query 79014 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 79073
||| | | | || | | | || || || || || ||||| || |||||
Sbjct 8231 CCAAAGTCCCATATCAACAAGGTCCTTCAGAAGCCATGGGTTGACAACTTGGAACTCTCC 8172
Query 79074 AGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCC 79133
|| | || | |||| ||| || || |||||||| || | |||| || ||
Sbjct 8171 AGCAAGAACACGACGAGAGTAGATGTTGGAAGTATATGGCTCGAAGCATTCGTTGAACCC 8112
Query 79134 CAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193
| ||||||| || || ||||||||||| || || | ||||| || | ||||||
Sbjct 8111 AAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAAGACC 8052
Query 79194 GTA-TGATCTGATTTTATCTTTTAGAGATT-CCCAATCCCAAAGATCAGACGG-GACAAC 79250
| || | ||| | | || | || | |||| |||||||| || | || | |
Sbjct 8051 ATGCTGGGC-GATCTGTTGCTTCA-AGCTAGCCCAGTCCCAAAGGTCGGTAGGTGTC--- 7997
Query 79251 ATT---CCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTC 79307
|| ||| | |||||||| || || || || ||| ||| ||||| ||
Sbjct 7996 -TTGCCCCACATGTCATATTGAAGCTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTC 7938
Query 79308 ATAAGGTCCTTCCTTTTCGGCTAATTC-ACAACTCGCCTCTAATGCTCCGTAATAAATGG 79366
|| | ||| | | | || | || || | || || || ||| ||| || |
Sbjct 7937 GTATGTTCCATGGGTCTTTGCCAGCTCGACGGATGCAGTCAAA-GCAGCGTGATAGATTG 7879
Query 79367 TTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA-TCAAATGGATAATTTAAG 79425
| || ||||| | | ||||| | | || ||| ||| | || || ||| | |||
Sbjct 7878 TCTCAAAAATTTGGATGTTGAGGTGCTTAGCCTCT-GGCGACTCGAAAGGA-AGGCGAAG 7821
Query 79426 AG--AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 79483
| || ||| || || || | ||||||||||||| | | || ||||| || | ||
Sbjct 7820 TGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAAT 7762
Query 79484 TAGAAATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTC 79542
| | |||| |||||||||| || || || || ||||| ||||| ||||| | |||
Sbjct 7761 T-GCTCTTTCTTGCTTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTTC 7703
Query 79543 CTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCA-AATCGTCCATCTATTA- 79600
|||| | |||| | || || | || || | || ||| || | | ||| ||
Sbjct 7702 TTGACAACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCA 7643
Query 79601 -CAA-ACATGTTCAACGCGACAG--ATGCCAGATTACAAACGGCTACCTCATTAGCATCC 79656
||| | ||||| | | | || |||||| ||| |||||||| || |||| | | |
Sbjct 7642 TCAACATATGTTGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATCTGG-TGC 7584
Query 79657 GCA-TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTG 79715
|| || | | || || ||||| ||||| | ||||| || | || | ||
Sbjct 7583 ACAGTACTCAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTG 7524
Query 79716 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTG 79775
|| |||||| ||| || |||||||| || || ||||| || | || || || ||||
Sbjct 7523 GTTGCTCTTTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTG 7464
Query 79776 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTT-TT 79834
|| ||| | ||| | | ||| | | ||||||| | || ||| | | | ||
Sbjct 7463 AGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAC---AGTCTTACGGCCCATGTT 7407
Query 79835 CTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCC 79892
||| ||||||| ||| || || ||||| || || |||| || | || ||
Sbjct 7406 CTCAGCCTCGTATTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACC 7347
Query 79893 AGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATA 79950
|||||| |||| ||| |||||||| | ||| || | || ||| || || |||||
Sbjct 7346 AGGACACTCGTTAGGGCACATCAATGTCCAGTCAAGGT--TCTTTTCAACACGCTTCATG 7289
Query 79951 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCC 80009
|| | ||| |||||||||||||| ||| || ||||| | || | ||| || |||||
Sbjct 7288 AATAAATCTGGAATCCAAAGAGC-ATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCC 7230
Query 80010 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 80069
|||||| || || |||||| | | | ||||| ||||| || || | ||| ||
Sbjct 7229 GTGGTTCTTTCGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGAT 7170
Query 80070 GGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 80129
||| | | | || || || ||||| || |||||||| | ||||| |||||||| || |
Sbjct 7169 GGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAA 7110
Query 80130 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 80189
||||| | ||| |||| ||| || ||||| | || || || || | || ||| |||
Sbjct 7109 AACTCGAAGCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCC 7050
Query 80190 ACTGGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 80245
| ||||||| || | || ||| ||||| || || || || | ||||| || |
Sbjct 7049 AGTGGCACGGATTCTGTGGAC--ATT--AAGACCGATACCACCAGCGTTCTTAGAAATCA 6994
Query 80246 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTA 80305
||||| || || || ||||| || || || ||||| || || |||||| | |
Sbjct 6993 TAGCGCAAGTCTTCAAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGA 6934
Query 80306 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365
| ||||| || | ||| | ||| || ||| ||| | || ||||| ||||
Sbjct 6933 GGAAACATGATGAGAGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGT 6874
Query 80366 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA-TCCCAT 80424
| ||||| |||| |||| | ||||| |||||||| || | || ||| | ||
Sbjct 6873 GGGTAAAGTATTTGCTGGACATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCAC 6814
Query 80425 TGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTA 80484
| ||||| || || || |||||||| | ||| || || || | ||| |||||| |
Sbjct 6813 CG-TGAATACCAACAGCAACACGCATAATCATATGTTGTGGACGTTCGCAAATCTTGCCA 6755
Query 80485 TTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAA 80542
| | | | || ||| || | || || || || || || | ||| |||||
Sbjct 6754 TCGAGACGGAGGAGATATGATCGCTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAA 6695
Query 80543 AGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCA 80602
|| || ||||| | ||| | |||||||| | ||| || || | || |||| ||
Sbjct 6694 --TCACGGTCGTACACAATGGCAGAGTTGAGCTCGGCCTCATGCTTCATGAC-ACATTCA 6638
Query 80603 TGGTGATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAA 80660
| || | ||| || || || || | | || ||| |||||| ||||||| | |
Sbjct 6637 T-ATGTTGCTTTGCTGATCATAGGTGACTCTCTCTTGTTTCGAGGATTGACATAGTGGTA 6579
Query 80661 TAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGG 80719
||| || || || | | | ||| | || || || | |||||| || || || || |
Sbjct 6578 TAAGTCGGAAATAAC-GCTCGAGAATTGCTTCTTGGTCTGCTTGTGGAGGTTGGAAACTG 6520
Query 80720 CTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753
| ||||| || || | ||||||||||| |||||
Sbjct 6519 CAATTCTTGCAGCGAGGATGGCATAATCGGGATG 6486
>seq678
Length=9679
Score = 123 bits (136), Expect = 4e-23
Identities = 335/512 (65%), Gaps = 3/512 (1%)
Strand=Plus/Minus
Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728
|||||||| ||| | ||||| || ||||| || || || ||||| | | || || ||
Sbjct 8428 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTC 8369
Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788
|||||||| || || || |||| ||| || |||| || | | || | | |
Sbjct 8368 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGGGAAAGGAGA 8309
Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848
| | ||| || || || || || ||| ||||||| || ||||| || | ||
Sbjct 8308 AGGCGATCAGCAACGAACTCGATGTATTGCTTCATCAAGCCAGCGTTCATACCAAGGAGA 8249
Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908
| ||||||||| |||| | || || || ||||| || || || || || | |
Sbjct 8248 GCACAAGGAAGAGCCTCAGTCAAGAACTCCTGCTCAATCTCAACAGCCTCAGTGATGACA 8189
Query 49909 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 49968
| | || | | | || || | ||| | ||| || | | ||||| |||
Sbjct 8188 GCTTGGACAGCAGCCTTGCTTGGGCGGTGCTTGAGATGGGAGAAGAGGAGGCATGCAAAA 8129
Query 49969 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 50028
||| ||| ||||||||||| | || | |||||||| || || || || | |||
Sbjct 8128 TCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGACCAGCCATA 8069
Query 50029 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCT 50088
|| |||||||| || | |||||| ||||| || || || ||| ||||||||| || ||
Sbjct 8068 AGACCACGCTTCTTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAGATACCCTCA 8009
Query 50089 ACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACTTT 50145
|| || |||||||||||||| | | || | | | | |||| || |||||
Sbjct 8008 ACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGACTCCTTGTCCTGGATCCAACGA 7949
Query 50146 TGAGCCCAATCGGCCTTCTTTTTTACACAAGG 50177
|||||||||||||||||| || | |||||
Sbjct 7948 ACAGCCCAATCGGCCTTCTTCTTGATGCAAGG 7917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718226161768360
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