Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 217 2e-51
>seq4538
Length=19519
Score = 217 bits (240), Expect = 2e-51
Identities = 1307/2066 (63%), Gaps = 51/2066 (2%)
Strand=Plus/Minus
Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860
|| || ||||| || | || || || | || || ||||||||||| || || || |||
Sbjct 8530 GTGAATTGAATAGGTGCTGAGGCAGCCATGGTTCGGAGATAGTACATTCCAGTCTTGAGA 8471
Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920
|| | |||| || ||||||||||| || | || | | || || |||
Sbjct 8470 CCCAACTTCCAACCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATG 8411
Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980
|| || ||||| || ||| |||||| ||||| || || | || |||||||| | | |
Sbjct 8410 TGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATCTGGACG 8351
Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040
|| || ||||| || ||||||| ||| || |||| ||| ||||| |||| | |
Sbjct 8350 ATAGTACGTTGTGAGATCTCCCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGATG 8291
Query 71041 TTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTC 71097
|||| | || || || ||||||||||| || || || | || || || | ||| |
Sbjct 8290 TTTGGAACATTTTGGATTGATCCACCATCAGCGATGATTCGGTTCTTCATGTTGTCAGAC 8231
Query 71098 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCA 71157
|| | | | || | | | || || || || || ||||| || ||||||
Sbjct 8230 CAAAGTCCCATATCAACAAGGTCCTTCAGAAGCCATGGGTTGACAACTTGGAACTCTCCA 8171
Query 71158 GACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTT--- 71214
| | || | ||||| ||| || || ||||| || || || |||| ||
Sbjct 8170 GCAAGAACACGACGAGAGTAGATGTTGGAAGTATATGGCTC----GAAGCATTCGTTGAA 8115
Query 71215 CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAG 71273
||||| ||||||| || ||||| |||||||| || || | | ||| || | |||
Sbjct 8114 CCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAAG 8055
Query 71274 ACCATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAA 71332
|||||| || || | | ||| || | |||| | |||||| || | |||
Sbjct 8054 ACCATGCTGGGCGATCTGTTGCTTCAAGCTAG-CCCAGTCCCAAAGGTCGGTAGGTGTCT 7996
Query 71333 CNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGT 71392
||| || || ||| ||| ||||||| ||||
Sbjct 7995 TGCCCCACATGTCATATTGAAGCTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTCGT 7936
Query 71393 ATGGTCCTTCTTTTTCGGCTAGTTC-ACAACTCGCCTCTAATGCTCCATAATAAATGGTT 71451
||| ||| | | | || || || || | || || || | | ||| || ||
Sbjct 7935 ATGTTCCATGGGTCTTTGCCAGCTCGACGGATGCAGTCAAA-GCAGCGTGATAGATTGTC 7877
Query 71452 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG- 71510
|| ||||| | | ||||| | | || || || || || ||| | ||| |
Sbjct 7876 TCAAAAATTTGGATGTTGAGGTGCTTAGCCTCTGGCGACTCGAAAGGA-AGGCGAAGTGC 7818
Query 71511 -AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAG 71569
|| ||| || || || | |||||||| |||| | | || |||||||| | ||| |
Sbjct 7817 CAAGAAA-GCATCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAATT-G 7760
Query 71570 AAATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 71628
|||| |||||||||| || || || || ||||| ||||| ||||| | || ||
Sbjct 7759 CTCTTTCTTGCTTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTTCTTG 7700
Query 71629 ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCA-TCTATTA--CA 71685
|| | |||| | || || | || || | || ||| | | | ||| || ||
Sbjct 7699 ACAACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCATCA 7640
Query 71686 A-ACACGTTC-AAG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742
| | | ||| ||| |||| ||||||| ||| |||||||| || |||| | |
Sbjct 7639 ACATATGTTGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATCTGGTGCACAG 7580
Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802
|| | | ||| || ||||| || || | |||||| || | || | || ||
Sbjct 7579 TACTCAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTG 7520
Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862
|||||| ||| || |||||||| || || || || || | || || || |||||| |
Sbjct 7519 CTCTTTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCT 7460
Query 71863 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTT-TTCTCT 71921
|| | ||| | | ||| | | ||||||| | | |||| | | | |||||
Sbjct 7459 TCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAC---AGTCTTACGGCCCATGTTCTCA 7403
Query 71922 T--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGA 71979
||||||| ||| || || ||||| || || || | | | || ||||||
Sbjct 7402 GCCTCGTATTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGA 7343
Query 71980 CATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGA 72037
|| || || || |||||||||| ||| || | || ||| || || ||||| || |
Sbjct 7342 CACTCGTTAGGGCACATCAATGTCCAGTCAAGGT--TCTTTTCAACACGCTTCATGAATA 7285
Query 72038 GATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 72096
||| |||||||||||||| ||| || ||||| | || | ||| || |||||
Sbjct 7284 AATCTGGAATCCAAAGAGC-ATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGG 7226
Query 72097 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 72156
|||||| || || |||||| | | | ||||| ||||| || || | ||| |||||
Sbjct 7225 TTCTTTCGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCA 7166
Query 72157 ATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 72216
| | | || || || ||||| || |||||||| | ||||| |||||||| || |||||
Sbjct 7165 AAAGCACCAGGACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACT 7106
Query 72217 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 72276
| | ||| |||| ||| || ||||| || || || || | || ||| |||| ||
Sbjct 7105 CGAAGCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTG 7046
Query 72277 GCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 72336
||||| || || | ||||| || || || || | ||||| || | |||||
Sbjct 7045 GCACGGATTCTGTGGACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAA 6986
Query 72337 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 72396
|| || || ||||| || || || || || || ||| |||||| | || |||||
Sbjct 6985 GTCTTCAAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACAT 6926
Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456
|| | ||| | ||| || ||| ||| | || ||||| ||||| |||||
Sbjct 6925 GATGAGAGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGTAAAG 6866
Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA-TCCCATTGATGTAT 72515
|||| |||| | ||||| |||||||| || | || ||| | || | || ||
Sbjct 6865 TATTTGCTGGACATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCG-TGAAT 6807
Query 72516 TCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 72575
|| || || |||||||| | |||||| || || | ||| |||||| || |
Sbjct 6806 ACCAACAGCAACACGCATAATCATATGTTGTGGACGTTCGCAAATCTTGCCATCGAGACG 6747
Query 72576 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGT 72633
| | || ||| || | || || || || || || | ||| ||||| || ||
Sbjct 6746 GAGGAGATATGATCGCTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAA--TCACGG 6689
Query 72634 TCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATA 72693
||||| | ||| | || ||||| | ||| || || | || | || ||| || |
Sbjct 6688 TCGTACACAATGGCAGAGTTGAGCTCGGCCTCATGCTTCATGAC-ACATTCAT-ATGTTG 6631
Query 72694 CTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCT 72751
||| || || || || | | || ||| |||||| ||||||| | |||| ||
Sbjct 6630 CTTTGCTGATCATAGGTGACTCTCTCTTGTTTCGAGGATTGACATAGTGGTATAAGTCGG 6571
Query 72752 CCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTG 72810
|| || | | | ||| | || || || | |||||| || || || || || |||||
Sbjct 6570 AAATAAC-GCTCGAGAATTGCTTCTTGGTCTGCTTGTGGAGGTTGGAAACTGCAATTCTT 6512
Query 72811 GCGGCTAGAATGGCATAATCTGGATG 72836
|| || || ||||||||||| |||||
Sbjct 6511 GCAGCGAGGATGGCATAATCGGGATG 6486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671099359499240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |