Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4538 217 2e-51 >seq4538 Length=19519 Score = 217 bits (240), Expect = 2e-51 Identities = 1307/2066 (63%), Gaps = 51/2066 (2%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || || ||||| || | || || || | || || ||||||||||| || || || ||| Sbjct 8530 GTGAATTGAATAGGTGCTGAGGCAGCCATGGTTCGGAGATAGTACATTCCAGTCTTGAGA 8471 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || | |||| || ||||||||||| || | || | | || || ||| Sbjct 8470 CCCAACTTCCAACCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATG 8411 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 || || ||||| || ||| |||||| ||||| || || | || |||||||| | | | Sbjct 8410 TGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATCTGGACG 8351 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040 || || ||||| || ||||||| ||| || |||| ||| ||||| |||| | | Sbjct 8350 ATAGTACGTTGTGAGATCTCCCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGATG 8291 Query 71041 TTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTC 71097 |||| | || || || ||||||||||| || || || | || || || | ||| | Sbjct 8290 TTTGGAACATTTTGGATTGATCCACCATCAGCGATGATTCGGTTCTTCATGTTGTCAGAC 8231 Query 71098 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCA 71157 || | | | || | | | || || || || || ||||| || |||||| Sbjct 8230 CAAAGTCCCATATCAACAAGGTCCTTCAGAAGCCATGGGTTGACAACTTGGAACTCTCCA 8171 Query 71158 GACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTT--- 71214 | | || | ||||| ||| || || ||||| || || || |||| || Sbjct 8170 GCAAGAACACGACGAGAGTAGATGTTGGAAGTATATGGCTC----GAAGCATTCGTTGAA 8115 Query 71215 CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAG 71273 ||||| ||||||| || ||||| |||||||| || || | | ||| || | ||| Sbjct 8114 CCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAAG 8055 Query 71274 ACCATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAA 71332 |||||| || || | | ||| || | |||| | |||||| || | ||| Sbjct 8054 ACCATGCTGGGCGATCTGTTGCTTCAAGCTAG-CCCAGTCCCAAAGGTCGGTAGGTGTCT 7996 Query 71333 CNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGT 71392 ||| || || ||| ||| ||||||| |||| Sbjct 7995 TGCCCCACATGTCATATTGAAGCTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTCGT 7936 Query 71393 ATGGTCCTTCTTTTTCGGCTAGTTC-ACAACTCGCCTCTAATGCTCCATAATAAATGGTT 71451 ||| ||| | | | || || || || | || || || | | ||| || || Sbjct 7935 ATGTTCCATGGGTCTTTGCCAGCTCGACGGATGCAGTCAAA-GCAGCGTGATAGATTGTC 7877 Query 71452 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG- 71510 || ||||| | | ||||| | | || || || || || ||| | ||| | Sbjct 7876 TCAAAAATTTGGATGTTGAGGTGCTTAGCCTCTGGCGACTCGAAAGGA-AGGCGAAGTGC 7818 Query 71511 -AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAG 71569 || ||| || || || | |||||||| |||| | | || |||||||| | ||| | Sbjct 7817 CAAGAAA-GCATCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAATT-G 7760 Query 71570 AAATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 71628 |||| |||||||||| || || || || ||||| ||||| ||||| | || || Sbjct 7759 CTCTTTCTTGCTTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTTCTTG 7700 Query 71629 ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCA-TCTATTA--CA 71685 || | |||| | || || | || || | || ||| | | | ||| || || Sbjct 7699 ACAACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCATCA 7640 Query 71686 A-ACACGTTC-AAG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 | | | ||| ||| |||| ||||||| ||| |||||||| || |||| | | Sbjct 7639 ACATATGTTGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATCTGGTGCACAG 7580 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 || | | ||| || ||||| || || | |||||| || | || | || || Sbjct 7579 TACTCAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTG 7520 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 |||||| ||| || |||||||| || || || || || | || || || |||||| | Sbjct 7519 CTCTTTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCT 7460 Query 71863 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTT-TTCTCT 71921 || | ||| | | ||| | | ||||||| | | |||| | | | ||||| Sbjct 7459 TCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAC---AGTCTTACGGCCCATGTTCTCA 7403 Query 71922 T--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGA 71979 ||||||| ||| || || ||||| || || || | | | || |||||| Sbjct 7402 GCCTCGTATTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGA 7343 Query 71980 CATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGA 72037 || || || || |||||||||| ||| || | || ||| || || ||||| || | Sbjct 7342 CACTCGTTAGGGCACATCAATGTCCAGTCAAGGT--TCTTTTCAACACGCTTCATGAATA 7285 Query 72038 GATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 72096 ||| |||||||||||||| ||| || ||||| | || | ||| || ||||| Sbjct 7284 AATCTGGAATCCAAAGAGC-ATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGG 7226 Query 72097 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 72156 |||||| || || |||||| | | | ||||| ||||| || || | ||| ||||| Sbjct 7225 TTCTTTCGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCA 7166 Query 72157 ATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 72216 | | | || || || ||||| || |||||||| | ||||| |||||||| || ||||| Sbjct 7165 AAAGCACCAGGACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACT 7106 Query 72217 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 72276 | | ||| |||| ||| || ||||| || || || || | || ||| |||| || Sbjct 7105 CGAAGCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTG 7046 Query 72277 GCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 72336 ||||| || || | ||||| || || || || | ||||| || | ||||| Sbjct 7045 GCACGGATTCTGTGGACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAA 6986 Query 72337 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 72396 || || || ||||| || || || || || || ||| |||||| | || ||||| Sbjct 6985 GTCTTCAAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACAT 6926 Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 || | ||| | ||| || ||| ||| | || ||||| ||||| ||||| Sbjct 6925 GATGAGAGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGTAAAG 6866 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA-TCCCATTGATGTAT 72515 |||| |||| | ||||| |||||||| || | || ||| | || | || || Sbjct 6865 TATTTGCTGGACATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCG-TGAAT 6807 Query 72516 TCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 72575 || || || |||||||| | |||||| || || | ||| |||||| || | Sbjct 6806 ACCAACAGCAACACGCATAATCATATGTTGTGGACGTTCGCAAATCTTGCCATCGAGACG 6747 Query 72576 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGT 72633 | | || ||| || | || || || || || || | ||| ||||| || || Sbjct 6746 GAGGAGATATGATCGCTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAA--TCACGG 6689 Query 72634 TCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATA 72693 ||||| | ||| | || ||||| | ||| || || | || | || ||| || | Sbjct 6688 TCGTACACAATGGCAGAGTTGAGCTCGGCCTCATGCTTCATGAC-ACATTCAT-ATGTTG 6631 Query 72694 CTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCT 72751 ||| || || || || | | || ||| |||||| ||||||| | |||| || Sbjct 6630 CTTTGCTGATCATAGGTGACTCTCTCTTGTTTCGAGGATTGACATAGTGGTATAAGTCGG 6571 Query 72752 CCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTG 72810 || || | | | ||| | || || || | |||||| || || || || || ||||| Sbjct 6570 AAATAAC-GCTCGAGAATTGCTTCTTGGTCTGCTTGTGGAGGTTGGAAACTGCAATTCTT 6512 Query 72811 GCGGCTAGAATGGCATAATCTGGATG 72836 || || || ||||||||||| ||||| Sbjct 6511 GCAGCGAGGATGGCATAATCGGGATG 6486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671099359499240