Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4538 125 1e-23 seq678 105 1e-17 >seq4538 Length=19519 Score = 125 bits (138), Expect = 1e-23 Identities = 365/555 (66%), Gaps = 8/555 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 |||||||| ||| ||| || | || || ||||| || | | ||| || | || | Sbjct 7068 ACAAACGGAAACTCCAACGGAATTGTTCCTATGCTTCGAGTTTTCAACAACACCGCCA-G 7126 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||| ||| ||||| || || || || || || ||| | ||| ||||| | || || || Sbjct 7127 ATATGTTGATCAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATCTACCTTGAGCCATG 7186 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| || || ||||| || | || | || || ||| || ||||||| || Sbjct 7187 GCACGCTGATGTCTTTGAGTTCCTTGACCTCCGAAAGAACCACGGAAAGGAAGAGGTCCG 7246 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CAAC 97043 ||| | || | || ||||| || ||| | |||||||| ||||||||||| || || Sbjct 7247 CGCCCGTGATCTTTTCTATGCTCTTTGGATTCCAGATTTATTCATGAAGCGTGTTGAAAA 7306 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 || | | |||||| | |||||||| || || || ||| || | || | Sbjct 7307 GAACCTTG--ACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCTGACGTTTAC 7364 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACG 97162 || || ||||||||||| ||| | |||||| ||| | | ||| |||| Sbjct 7365 GGTGATGAGTTTGAGGCTTTGTATGAGAAATACGAGGCTGAGAACATGGGCCGTAAGAC- 7423 Query 97163 AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 ||| | || | | | || ||| | | || | |||||| ||||| |||| || Sbjct 7424 TGTCAAGGCTCAAAAGCTTTGGTACTCTATTCTCGAAGCTCAGACCGAGACCGGAAACCC 7483 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 | ||| |||||||||||| || || || || |||||||| || | || ||||| Sbjct 7484 TTTCATGCTCTACAAGGATGCCTGCAACCGAAAGAGCAACCAGAAGAACCTTGGTACCAT 7543 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGT 97342 | ||||||| ||||||||||| ||||| |||||| | || || || || || Sbjct 7544 CCGAAGCTCCAACCTGTGCACGGAGATTGTTGAGTACTGTGCACCAGATGAAGTCGCCGT 7603 Query 97343 TTGCGTTCTGGCATC 97357 |||| | ||||||| Sbjct 7604 TTGCAATTTGGCATC 7618 >seq678 Length=9679 Score = 105 bits (116), Expect = 1e-17 Identities = 202/290 (70%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| |||||| |||| || || ||||| | || ||| | ||||| Sbjct 7527 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCGTTCTGGACTGCTGAGGAGATTGATCTA 7586 Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 |||||||| || |||| ||| | | | | | || || ||||| | || || || Sbjct 7587 TCCAAGGATCTCAACGACTGGAACAACAAGCTCAACGATGAC-GAGCGTTACTTCATCTC 7645 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196 ||| | | || |||||||| | ||| || |||||||||||||| || || |||| || Sbjct 7646 CCACGTCCTCGCTTTCTTTGCTGCCTCTGACGGAATCGTCAACGAGAACCTACTTGA-AC 7704 Query 125197 GATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 | ||| | | |||| | |||| |||| | ||| || || ||||| |||||| Sbjct 7705 GCTTCAGCAATGAAGTTCA-AGTTCCTGAGGCCCGATTCTTCTATGGTTTCCAGATCATG 7763 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 || |||||| | ||||| || | ||||| || ||||| | ||||| Sbjct 7764 ATGGAGAACATTCACTCTGAGACCTACTCCCTCCTTATTGATACCTACAT 7813 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGA 125426 || ||||| | |||| |||| |||||| | ||| | ||||| | | || | | Sbjct 7929 AAGAAGGCCGATTGGGCTGTTCGTTGGATCCAGGACAAGGAGTCTACCTTTGCTCAACGT 7988 Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || || || || || || ||||| ||||||||| || ||| || |||||||| Sbjct 7989 CTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTTCGCATCCATCTTT 8048 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||| | |||||||| || || ||| | || || || | |||||||| || || || Sbjct 8049 TGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACGAGTTGATCTCCCGT 8108 Query 125547 GACGAGGGCCTACACTGTGACTTTGC 125572 |||||||| || ||| || ||||| Sbjct 8109 GACGAGGGTCTCCACACCGATTTTGC 8134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741015208873240