Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 125 1e-23
seq678 105 1e-17
>seq4538
Length=19519
Score = 125 bits (138), Expect = 1e-23
Identities = 365/555 (66%), Gaps = 8/555 (1%)
Strand=Plus/Plus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865
|||||||| ||| ||| || | || || ||||| || | | ||| || | || |
Sbjct 7068 ACAAACGGAAACTCCAACGGAATTGTTCCTATGCTTCGAGTTTTCAACAACACCGCCA-G 7126
Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925
||| ||| ||||| || || || || || || ||| | ||| ||||| | || || ||
Sbjct 7127 ATATGTTGATCAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATCTACCTTGAGCCATG 7186
Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985
|||||| || || ||||| || | || | || || ||| || ||||||| ||
Sbjct 7187 GCACGCTGATGTCTTTGAGTTCCTTGACCTCCGAAAGAACCACGGAAAGGAAGAGGTCCG 7246
Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CAAC 97043
||| | || | || ||||| || ||| | |||||||| ||||||||||| || ||
Sbjct 7247 CGCCCGTGATCTTTTCTATGCTCTTTGGATTCCAGATTTATTCATGAAGCGTGTTGAAAA 7306
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103
|| | | |||||| | |||||||| || || || ||| || | || |
Sbjct 7307 GAACCTTG--ACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCTGACGTTTAC 7364
Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACG 97162
|| || ||||||||||| ||| | |||||| ||| | | ||| ||||
Sbjct 7365 GGTGATGAGTTTGAGGCTTTGTATGAGAAATACGAGGCTGAGAACATGGGCCGTAAGAC- 7423
Query 97163 AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222
||| | || | | | || ||| | | || | |||||| ||||| |||| ||
Sbjct 7424 TGTCAAGGCTCAAAAGCTTTGGTACTCTATTCTCGAAGCTCAGACCGAGACCGGAAACCC 7483
Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282
| ||| |||||||||||| || || || || |||||||| || | || |||||
Sbjct 7484 TTTCATGCTCTACAAGGATGCCTGCAACCGAAAGAGCAACCAGAAGAACCTTGGTACCAT 7543
Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGT 97342
| ||||||| ||||||||||| ||||| |||||| | || || || || ||
Sbjct 7544 CCGAAGCTCCAACCTGTGCACGGAGATTGTTGAGTACTGTGCACCAGATGAAGTCGCCGT 7603
Query 97343 TTGCGTTCTGGCATC 97357
|||| | |||||||
Sbjct 7604 TTGCAATTTGGCATC 7618
>seq678
Length=9679
Score = 105 bits (116), Expect = 1e-17
Identities = 202/290 (70%), Gaps = 6/290 (2%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||| |||||| |||| || || ||||| | || ||| | |||||
Sbjct 7527 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCGTTCTGGACTGCTGAGGAGATTGATCTA 7586
Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137
|||||||| || |||| ||| | | | | | || || ||||| | || || ||
Sbjct 7587 TCCAAGGATCTCAACGACTGGAACAACAAGCTCAACGATGAC-GAGCGTTACTTCATCTC 7645
Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196
||| | | || |||||||| | ||| || |||||||||||||| || || |||| ||
Sbjct 7646 CCACGTCCTCGCTTTCTTTGCTGCCTCTGACGGAATCGTCAACGAGAACCTACTTGA-AC 7704
Query 125197 GATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255
| ||| | | |||| | |||| |||| | ||| || || ||||| ||||||
Sbjct 7705 GCTTCAGCAATGAAGTTCA-AGTTCCTGAGGCCCGATTCTTCTATGGTTTCCAGATCATG 7763
Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
|| |||||| | ||||| || | ||||| || ||||| | |||||
Sbjct 7764 ATGGAGAACATTCACTCTGAGACCTACTCCCTCCTTATTGATACCTACAT 7813
Score = 84.2 bits (92), Expect = 3e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGA 125426
|| ||||| | |||| |||| |||||| | ||| | ||||| | | || | |
Sbjct 7929 AAGAAGGCCGATTGGGCTGTTCGTTGGATCCAGGACAAGGAGTCTACCTTTGCTCAACGT 7988
Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486
|| || || || || || || ||||| ||||||||| || ||| || ||||||||
Sbjct 7989 CTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTTCGCATCCATCTTT 8048
Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546
||| | |||||||| || || ||| | || || || | |||||||| || || ||
Sbjct 8049 TGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACGAGTTGATCTCCCGT 8108
Query 125547 GACGAGGGCCTACACTGTGACTTTGC 125572
|||||||| || ||| || |||||
Sbjct 8109 GACGAGGGTCTCCACACCGATTTTGC 8134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741015208873240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |