Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4739 91.5 1e-13 >seq4739 Length=56954 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| | ||| || || || ||||| || ||||| |||||||| || Sbjct 20905 CCACCACGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAG 20846 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| ||| |||| || | |||||| |||||| | || | |||||||||||| |||| Sbjct 20845 AGAGTTCGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGA 20786 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || || || ||| || ||| || | || ||||| ||| ||| || Sbjct 20785 ATACCCTCCTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACC 20726 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTAC 15351 || | |||||||| || || |||| ||| || || Sbjct 20725 TCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTGAC 20691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362158237633809