Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 116 9e-21
seq678 96.9 8e-15
>seq4739
Length=56954
Score = 116 bits (128), Expect = 9e-21
Identities = 130/174 (75%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421
||| ||||| || || || || ||||| || ||||||| ||||| || |||||||| ||
Sbjct 20876 TGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCCTCAAGTTGTTTACC 20817
Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481
||| || || || | ||||| || || || || || || |||||||||||||| | ||
Sbjct 20816 AGCGAAGATAAGACGTTGTTGGTCCGGTGGAATACCCTCCTTATCCTGAATCTTCGACTT 20757
Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|| || || | ||| ||| | ||| ||||| || ||||| ||||| |||||
Sbjct 20756 AACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGAGTAATGGTCTTGCCAGT 20703
Score = 105 bits (116), Expect = 2e-17
Identities = 127/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || |||||||| || || || || || || | |||||| || || || || ||
Sbjct 20592 GTAGACTCCTTCTGAATGTTGTAATCGGAAAGGGTACGACCGTCCTCGAGCTGCTTGCCG 20533
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | | ||||| || ||||| || ||||| || ||||| ||||| | ||
Sbjct 20532 GCGAAGATCAAGCGTTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGACTTG 20473
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|| || || | |||||| || ||||| || || |||||||||||||||||
Sbjct 20472 ACGTTGTCGATGGTATCAGAAGACTCTACTTCGAGAGTAATAGTCTTACCAGT 20420
Score = 100 bits (110), Expect = 7e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
|||||| | ||| | || || || || || || || ||||| || | |||| || ||
Sbjct 21119 AAGTACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATC 21060
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| ||||| || || || ||||| || | |||||||||||| || || || || || ||
Sbjct 21059 CTCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACCCTCCTTGTC 21000
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|| ||||| | || ||||| || | |||||| | ||| || || | || || ||
Sbjct 20999 TTGGATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAAAGTGATTGT 20940
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| ||||| | || || || || ||||||||
Sbjct 20939 CTTTCCAGTCAAGGTCTTAACGAAGATCTGCAT 20907
>seq678
Length=9679
Score = 96.9 bits (106), Expect = 8e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
||||| ||||| ||||| || ||||| |||||| || ||||| || | |||||||||
Sbjct 7992 GTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTTCGCATCCATCTTTTGG 8051
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
|||||||| | || |||||| | || | |||||||| ||||| ||||| | | |||
Sbjct 8052 TTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACGAGTTGATCTCCCGTGAC 8111
Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283
|| ||| | ||| ||| || || ||
Sbjct 8112 GAGGGTCTCCACACCGATTTTGCATG 8137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151328341365292
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |