Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4739 116 9e-21 seq678 96.9 8e-15 >seq4739 Length=56954 Score = 116 bits (128), Expect = 9e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| ||||| || || || || ||||| || ||||||| ||||| || |||||||| || Sbjct 20876 TGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCCTCAAGTTGTTTACC 20817 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 ||| || || || | ||||| || || || || || || |||||||||||||| | || Sbjct 20816 AGCGAAGATAAGACGTTGTTGGTCCGGTGGAATACCCTCCTTATCCTGAATCTTCGACTT 20757 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || | ||| ||| | ||| ||||| || ||||| ||||| ||||| Sbjct 20756 AACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGAGTAATGGTCTTGCCAGT 20703 Score = 105 bits (116), Expect = 2e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || || || || || || | |||||| || || || || || Sbjct 20592 GTAGACTCCTTCTGAATGTTGTAATCGGAAAGGGTACGACCGTCCTCGAGCTGCTTGCCG 20533 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||||| || ||||| || ||||| || ||||| ||||| | || Sbjct 20532 GCGAAGATCAAGCGTTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGACTTG 20473 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || | |||||| || ||||| || || ||||||||||||||||| Sbjct 20472 ACGTTGTCGATGGTATCAGAAGACTCTACTTCGAGAGTAATAGTCTTACCAGT 20420 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| | ||| | || || || || || || || ||||| || | |||| || || Sbjct 21119 AAGTACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATC 21060 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || ||||| || || || ||||| || | |||||||||||| || || || || || || Sbjct 21059 CTCAAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACCCTCCTTGTC 21000 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| | || ||||| || | |||||| | ||| || || | || || || Sbjct 20999 TTGGATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAAAGTGATTGT 20940 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| | || || || || |||||||| Sbjct 20939 CTTTCCAGTCAAGGTCTTAACGAAGATCTGCAT 20907 >seq678 Length=9679 Score = 96.9 bits (106), Expect = 8e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| ||||| || ||||| |||||| || ||||| || | ||||||||| Sbjct 7992 GTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTTCGCATCCATCTTTTGG 8051 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||| | || |||||| | || | |||||||| ||||| ||||| | | ||| Sbjct 8052 TTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACGAGTTGATCTCCCGTGAC 8111 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 || ||| | ||| ||| || || || Sbjct 8112 GAGGGTCTCCACACCGATTTTGCATG 8137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151328341365292