Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4739 86.0 5e-12 >seq4739 Length=56954 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || || ||||||||||||||||||||||| || || || || || | |||| Sbjct 21344 CACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTC-GCTAAGGGTACGACCATCCT 21286 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 ||| |||||||| || |||| || ||||| || || || | || ||||| ||| Sbjct 21285 CCAATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCT 21226 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||||| | | || || || | |||||| ||| | || || || | Sbjct 21225 GGATCTTGGACTTGACATTATCAATTGTGTCCGAAGACTCAACCTCTAACGTAATTGTCT 21166 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || | ||| || ||||| |||||||| Sbjct 21165 TGCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421226818638749