Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 86.0 5e-12
>seq4739
Length=56954
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575
||| || || || ||||||||||||||||||||||| || || || || || | ||||
Sbjct 21344 CACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTC-GCTAAGGGTACGACCATCCT 21286
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
||| |||||||| || |||| || ||||| || || || | || ||||| |||
Sbjct 21285 CCAATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCT 21226
Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695
|| || ||||| | | || || || | |||||| ||| | || || || |
Sbjct 21225 GGATCTTGGACTTGACATTATCAATTGTGTCCGAAGACTCAACCTCTAACGTAATTGTCT 21166
Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| || || | ||| || ||||| ||||||||
Sbjct 21165 TGCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421226818638749
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |