Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4206 123 4e-24 seq1958 104 4e-18 >seq4206 Length=27420 Score = 123 bits (136), Expect = 4e-24 Identities = 111/137 (81%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||||||||| |||||||||||||| || Sbjct 18895 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAAGGTATCACCAAGCCAGCCAT 18837 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || ||||||||||| ||||||||| | || | || |||| || |||| Sbjct 18836 CCGTCGTCTCGCGCGTCGTGGTGGTGTCAAGCGTATTTCAGCCATGATCTACGAGGAGAC 18777 Query 16552 TCGTGATGTTTTGAAGA 16568 || | |||| | |||| Sbjct 18776 CCGAGGTGTTCTCAAGA 18760 >seq1958 Length=38573 Score = 104 bits (114), Expect = 4e-18 Identities = 84/99 (85%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || ||||| ||||| || || Sbjct 33508 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACAAAGCCTGCGAT 33450 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| || ||||||||||| ||||||||| |||| Sbjct 33449 CCGTCGTCTTGCGCGTCGTGGTGGTGTCAAGCGTATCTC 33411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070857956057