Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq4206 123 4e-24
seq1958 104 4e-18
>seq4206
Length=27420
Score = 123 bits (136), Expect = 4e-24
Identities = 111/137 (81%), Gaps = 2/137 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| |||||| || ||||||||||| |||||||||||||| ||
Sbjct 18895 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAAGGTATCACCAAGCCAGCCAT 18837
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||||||| || ||||||||||| ||||||||| | || | || |||| || ||||
Sbjct 18836 CCGTCGTCTCGCGCGTCGTGGTGGTGTCAAGCGTATTTCAGCCATGATCTACGAGGAGAC 18777
Query 16552 TCGTGATGTTTTGAAGA 16568
|| | |||| | ||||
Sbjct 18776 CCGAGGTGTTCTCAAGA 18760
>seq1958
Length=38573
Score = 104 bits (114), Expect = 4e-18
Identities = 84/99 (85%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| |||||| || |||||||| || ||||| ||||| || ||
Sbjct 33508 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACAAAGCCTGCGAT 33450
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
||||||||| || ||||||||||| ||||||||| ||||
Sbjct 33449 CCGTCGTCTTGCGCGTCGTGGTGGTGTCAAGCGTATCTC 33411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79070857956057
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |