Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq4538 268 1e-66
seq678 129 7e-25
>seq4538
Length=19519
Score = 268 bits (296), Expect = 1e-66
Identities = 1330/2072 (64%), Gaps = 63/2072 (3%)
Strand=Plus/Minus
Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054
||||||||||| || || || || | | || || |||||||||||||| || || |||
Sbjct 8530 GTGAATTGAATAGGTGCTGAGGCAGCCATGGTTCGGAGATAGTACATTCCAGTCTTGAGA 8471
Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 62113
|| | |||| || ||||||||||| || | || || | || || | ||
Sbjct 8470 CCCAACTTCCAACCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 8412
Query 62114 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62173
||||| ||||| |||||| |||||| ||||| || || | || |||||||| | |
Sbjct 8411 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATCTGGAC 8352
Query 62174 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62233
||| || ||||| || ||||||| ||| || |||| ||| ||||| |||| |
Sbjct 8351 GATAGTACGTTGTGAGATCTCCCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGAT 8292
Query 62234 GTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62290
||||| | || || || ||||||||||| || || || | ||||| || | |||
Sbjct 8291 GTTTGGAACATTTTGGATTGATCCACCATCAGCGATGATTCGGTTCTTCATGTTGTCAGA 8232
Query 62291 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62350
||| | | | || | | | || || || || || ||||| || |||||
Sbjct 8231 CCAAAGTCCCATATCAACAAGGTCCTTCAGAAGCCATGGGTTGACAACTTGGAACTCTCC 8172
Query 62351 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTT-- 62408
|| | || | |||| ||| || || ||||| || || || |||| ||
Sbjct 8171 AGCAAGAACACGACGAGAGTAGATGTTGGAAGTATATGGCTC----GAAGCATTCGTTGA 8116
Query 62409 -CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62466
||||| ||||||| || ||||| |||||||| || || | ||||| || | ||
Sbjct 8115 ACCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAA 8056
Query 62467 GACCGTA-TGTTCTGATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCGACGGTAC 62524
|||| | || | ||| | | || | || | |||| | |||||| || | |||
Sbjct 8055 GACCATGCTGGGC-GATCTGTTGCTTCA-AGCTAGCCCAGTCCCAAAGGTCGGTAGGTGT 7998
Query 62525 AACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 62584
||| || || || ||| || ||| ||||||| ||
Sbjct 7997 CTTGCCCCACATGTCATATTGAAGCTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTC 7938
Query 62585 GTATGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGG 62643
||||| ||| | ||| || || || || | || || ||| ||| ||| || |
Sbjct 7937 GTATGTTCCATGGGTCTTTGCCAGCTCGACGGATGCAGTCAAA-GCAGCGTGATAGATTG 7879
Query 62644 TTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAG 62702
| || || || | | || || | | || || ||| | || || ||| | |||
Sbjct 7878 TCTCAAAAATTTGGATGTTGAGGTGCTTAGCCTCT-GGCGACTCGAAAGGA-AGGCGAAG 7821
Query 62703 AG--AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62760
| || ||| || || || | ||||||||||||| | | || ||||| || | ||
Sbjct 7820 TGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAAT 7762
Query 62761 TAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62819
| | |||| |||||||||| || || || || ||||| ||||| ||||| | ||
Sbjct 7761 T-GCTCTTTCTTGCTTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTTC 7703
Query 62820 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATCGCCCATCTATTA- 62877
|||||| |||| | || || | || || | || ||| || | | ||| ||
Sbjct 7702 TTGACAACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCA 7643
Query 62878 -CAA-ACATGTTC-AAG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62933
||| | ||||| ||| |||| ||||||| ||| |||||||| || |||| | | |
Sbjct 7642 TCAACATATGTTGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATCTGG-TGC 7584
Query 62934 GCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 62992
|| || | | ||||| ||||| || || | ||| || || | || | ||
Sbjct 7583 ACAGTACTCAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTG 7524
Query 62993 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63052
|| |||||| ||| || |||||||| || || ||||| || | || || || ||||
Sbjct 7523 GTTGCTCTTTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTG 7464
Query 63053 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCT-TT 63111
|| ||| | ||| | | ||| | | ||||||| | || || | | | ||
Sbjct 7463 AGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAC---AGTCTTACGGCCCATGTT 7407
Query 63112 CTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169
||| |||||| |||||| || ||||| || || |||| | |||| ||
Sbjct 7406 CTCAGCCTCGTATTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACC 7347
Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63229
|||||| || | || |||||||| | ||| || || | | || || ||||| ||
Sbjct 7346 AGGACACTCGTTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAA 7287
Query 63230 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63288
| ||| |||||||||||||| ||| || ||||| | || | || || |||||
Sbjct 7286 TAAATCTGGAATCCAAAGAGC-ATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGT 7228
Query 63289 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63348
|||||| || || |||||| | | | ||||| ||||| || || | ||| ||||
Sbjct 7227 GGTTCTTTCGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGG 7168
Query 63349 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63408
| | | | ||||| || ||||| || |||||||| | ||||| |||||||| || |||
Sbjct 7167 CAAAAGCACCAGGACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAA 7108
Query 63409 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCAC 63468
||| | ||| |||| ||| ||||| || | || || ||||| | || ||| ||||
Sbjct 7107 CTCGAAGCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAG 7048
Query 63469 TGGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63524
||||||| || | || ||| ||||| || || || || | ||||| || |
Sbjct 7047 TGGCACGGATTCTGTGGAC--ATT--AAGACCGATACCACCAGCGTTCTTAGAAATCATA 6992
Query 63525 GCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGA 63584
||||| || || |||||||| ||||| || ||||| || || |||||| | ||
Sbjct 6991 GCGCAAGTCTTCAAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGG 6932
Query 63585 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63644
||||| || | ||| | ||| || ||| ||| | || ||||| |||||
Sbjct 6931 AAACATGATGAGAGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGG 6872
Query 63645 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTG 63703
||||| |||| || | | ||||| |||||||| || | || ||| | || |
Sbjct 6871 GTAAAGTATTTGCTGGACATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCG 6812
Query 63704 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63763
||||| || || || |||||||| | ||| || || || | ||| |||||| |
Sbjct 6811 -TGAATACCAACAGCAACACGCATAATCATATGTTGTGGACGTTCGCAAATCTTGCCATC 6753
Query 63764 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAG 63821
| | | || ||| || | || || || || || || | ||| |||||
Sbjct 6752 GAGACGGAGGAGATATGATCGCTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAA-- 6695
Query 63822 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATG 63881
|| || ||||| | ||| | |||||||| | ||| || || | || | || |||
Sbjct 6694 TCACGGTCGTACACAATGGCAGAGTTGAGCTCGGCCTCATGCTTCATGAC-ACATTCAT- 6637
Query 63882 GTGATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATA 63939
|| | ||| || || || || | | || ||| |||||| ||||||| | |||
Sbjct 6636 ATGTTGCTTTGCTGATCATAGGTGACTCTCTCTTGTTTCGAGGATTGACATAGTGGTATA 6577
Query 63940 AATCCTCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCT 63998
| || || || | | | ||| | || || || | |||||| || || || || ||
Sbjct 6576 AGTCGGAAATAAC-GCTCGAGAATTGCTTCTTGGTCTGCTTGTGGAGGTTGGAAACTGCA 6518
Query 63999 ATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030
||||| || || || ||||||||||| |||||
Sbjct 6517 ATTCTTGCAGCGAGGATGGCATAATCGGGATG 6486
>seq678
Length=9679
Score = 129 bits (142), Expect = 7e-25
Identities = 336/512 (66%), Gaps = 3/512 (1%)
Strand=Plus/Minus
Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072
|||||||| ||| | ||||| || ||||| || || || ||||| | | || || ||
Sbjct 8428 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTC 8369
Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132
|||||||| || || || |||| ||| || |||| || | | || | | |
Sbjct 8368 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGGGAAAGGAGA 8309
Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192
| | ||| || ||||| || || ||| ||||||| || ||||| || | ||
Sbjct 8308 AGGCGATCAGCAACGAACTCGATGTATTGCTTCATCAAGCCAGCGTTCATACCAAGGAGA 8249
Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252
| ||||||||| |||| | || || || ||||| || || || || || | |
Sbjct 8248 GCACAAGGAAGAGCCTCAGTCAAGAACTCCTGCTCAATCTCAACAGCCTCAGTGATGACA 8189
Query 33253 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 33312
| | || | | | || || | ||| | ||| || | | ||||| |||
Sbjct 8188 GCTTGGACAGCAGCCTTGCTTGGGCGGTGCTTGAGATGGGAGAAGAGGAGGCATGCAAAA 8129
Query 33313 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 33372
||| ||| ||||||||||| | || | |||||||| || || || || | |||
Sbjct 8128 TCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGACCAGCCATA 8069
Query 33373 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCT 33432
|| |||||||| || | |||||| ||||| ||||| || ||| ||||||||| || ||
Sbjct 8068 AGACCACGCTTCTTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAGATACCCTCA 8009
Query 33433 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTT 33489
|| ||||||||||||| ||| | | || | | | |||| || |||||
Sbjct 8008 ACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGACTCCTTGTCCTGGATCCAACGA 7949
Query 33490 TGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33521
|||||||||||||||||| || | |||||
Sbjct 7948 ACAGCCCAATCGGCCTTCTTCTTGATGCAAGG 7917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622910220296840
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