Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4538 309 8e-79 seq678 125 2e-23 >seq4538 Length=19519 Score = 309 bits (342), Expect = 8e-79 Identities = 1163/1799 (65%), Gaps = 60/1799 (3%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||||| ||||| | ||| ||| || || ||| || |||| | ||| ||| Sbjct 6711 TTCGGATTCAAGACCCTCGAGCGATCATATCTCCTCCGTCTCGATGGCAAGATTTGCGAA 6770 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || || || |||||| | |||||||||||| ||||||| || | || |||| || Sbjct 6771 CGTCCACAACATATGATTATGCGTGTTGCTGTTGGTATTCACGGTGATAATATTGAGGCT 6830 Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGC-TCGTGTA-TTCACGCACGCCACGCCAACAA 363568 || ||||| || || || ||| | || | | || || || |||||| | |||||| Sbjct 6831 GCCATTGAGACCTACAA-CTT-GATGTCCAGCAAATACTTTACCCACGCCTCTCCAACAC 6888 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | |||||| |||| | |||| | || || || || || | | ||||||| Sbjct 6889 TTTTTGCTGCTGGTACTCCACAAGCACAACTCTCATCATGTTTCCTCATCGACATGAAGG 6948 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | || ||| || ||||| | |||||| | |||| ||| ||| | ||||| ||||| | Sbjct 6949 AGGACAGCATTGATGGTATTTATGACACTTTGAAGACTTGCGCTATGATTTCTAAGAACG 7008 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACATTCGCGGC 363747 | || || || ||| | |||||| | |||| ||| | | |||||| || Sbjct 7009 CTGGTGGTATCGGTCTTAATGTCCACAGAATCCGTGCCACTGGA-GCCTACATTGCTGGT 7067 Query 363748 ACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGG 363807 ||| ||| |||| || || | ||||| |||||||| || || |||| || || || Sbjct 7068 ACAAACGGAAACTCCAACGGAATTGTTCCTATGCTTCGAGTTTTCAACAACACCGCCAGA 7127 Query 363808 TACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCAT 363867 || || || |||||||| ||||| || || ||||| || || || ||||| Sbjct 7128 TATGTTGATCAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATCTACCTTGAGCCATGG 7187 Query 363868 CATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGT 363927 || || ||| | |||||||| ||||| ||||| || ||| ||||| || || | || Sbjct 7188 CACGCTGATGTCTTTGAGTTCCTTGACCTCCGAAAGAACCACGGAAAGGAAGAGGTCCGC 7247 Query 363928 GCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCA 363987 || |||||||| |||||||| |||||| || | || || |||||||| || || Sbjct 7248 GCCCGTGATCTTTTCTATGCTCTTTGGATTCCAGATTTATTCATGAAGCGTGTTGA---- 7303 Query 363988 GGTAAGA------ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTA 364041 |||| | ||| || | | ||||| |||| ||||| ||| | | || || Sbjct 7304 --AAAGAACCTTGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCTGACGTT 7361 Query 364042 TGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG 364101 | ||||| || | || ||| | || || || || || | ||| | || |||||| Sbjct 7362 TACGGTGATGAGTTTGAGGCTTTGTATGAGAAATACGAGGCTGAGAACATGGGCCGTAAG 7421 Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161 || | || || ||||| |||| | || | || | |||| ||||| |||| | Sbjct 7422 ACTGTCAAGGCTCAAAAGCTTTGGTACTCTATTCTCGAAGCTCAGACCGAGACCGGAA-A 7480 Query 364162 CCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTAC 364220 |||| | ||| | ||||| ||| | |||||||| ||| ||||||| || |||||||||| Sbjct 7481 CCCTTTCATGCTCTACAAGGATGCCTGCAACCGAAAGAGCAACCAGAAGAACCTTGGTAC 7540 Query 364221 AATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTG 364279 | || | || |||||| || || |||||| |||| ||| || || || || | Sbjct 7541 CA-TCCGAAGCTCCAACCTGTGCACGGAGATTGTTGAGTACTGTGCACCAGATGAAGTCG 7599 Query 364280 CCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT-----AAAAGA-TGGTACTT 364333 |||| || || | || || | || ||||| | | ||| |||||| | |||| Sbjct 7600 CCGTTTGCAATTTGGCATCACTTGCTCTTCCAACATATGTTGATGAAAAGACCGCCACTT 7659 Query 364334 TTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCA--ATCTCG-ACAAGG 364390 |||| |||| | ||| | || || || || | | | || | || | | ||| Sbjct 7660 ATGACTTCCAGAAGCTTCACGAGGT---CTGCCAAGTTGTTGTCAAGAACTTGAATAAGA 7716 Query 364391 TTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCATCGC 364449 |||| || | || || || ||| |||| ||||| || | | ||| | ||||| | Sbjct 7717 TTATTGATATCAACTACTACCCAGTTCCAGAAGCAAGAAAGAGC-AATTTCCGTCACAGA 7775 Query 364450 CCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTT 364509 || |||| ||||||||| || || || ||||| | ||| || || | | || Sbjct 7776 CCAATTGCTCTTGGTGTTCAAGGTCTTGCTGATGCTTTCTTGGCACTTCGCCTTCCTTTC 7835 Query 364510 GATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCA 364569 || ||||| || ||| || || | | || ||||| ||||| ||| || || Sbjct 7836 GAGTCGCCAGAGGCTAAGCACCTCAACATCCAAATTTTTGAGACAATCTATCACGCTGCT 7895 Query 364570 ATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCC 364629 ||||||| || || ||||||| ||| | |||| ||| || ||||| || || Sbjct 7896 TTGACTGCATCCGTCGAGCTGGCAAAGACCCATGGAACATACGAGACATATGAAGGCTCA 7955 Query 364630 CCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCT---GTCCGA 364686 ||| || |||| | | || | ||| | ||| | || | || || | || Sbjct 7956 CCTGCCTCCAAGGGCGAGCTTCAATATGACATGTGG---GGCAAGACACCTACCGACCTT 8012 Query 364687 TGGAACTGGGATACGCTACGTTCCAACGTTAAGA------AGCATGGTACTCGCAAC--- 364737 ||| |||||| || ||| | |||| ||| |||||||| ||||||| Sbjct 8013 TGGGACTGGGCTA-GCT-TGAAGCAAC----AGATCGCCCAGCATGGTCTTCGCAACAGT 8066 Query 364738 TCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAG 364797 | |||||| || || ||||| || || ||| || || || || |||||| Sbjct 8067 TTGCTCGTT---GCTCCTATGCCAACTGCCAGTACCAGTCAAATTCTTGGGTTCAACGAA 8123 Query 364798 TGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCG 364857 |||||||| || | ||| ||| | || || || || |||||| | ||||| || | Sbjct 8124 TGCTTCGAGCCATATACTTCCAACATCTACTCTCGTCGTGTTCTTGCTGGAGAGTTCCAA 8183 Query 364858 GTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATG 364917 || || || | || | ||||| ||| || || || ||| ||||| |||| Sbjct 8184 GTTGTCAACCCATGGCTTCTGAAGGACCTTGTTGATATGGGACTTTGGTCTGACAACATG 8243 Query 364918 AAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGAT 364977 |||||| |||||||| | | ||| || | || || ||||| | |||| ||| Sbjct 8244 AAGAACCGAATCATCGCTGATGGTGGATCAATCCAAAATGTTCCAAACATCCCAGCTGAT 8303 Query 364978 CTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCG 365037 | ||| || ||||||| || || ||||| || || || ||| || | | ||||| Sbjct 8304 ATCAAGGCTCTTTACAAGACTGTTTGGGAGATCTCACAACGTACTATCGTCCAGATGGCT 8363 Query 365038 GCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCA 365097 || ||||| ||||| || || ||| || || | ||| | ||||| | ||| Sbjct 8364 GCTGATCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATCCACATGAAGGACCCA 8423 Query 365098 ACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 ||| | ||| | || ||||||||| || ||||| | ||||| ||||| || Sbjct 8424 ACCATGGGTAAGATCACCAGTATGCATTTCGCAGGTTGGAAGTTGGGTCTCAAGACTGG 8482 >seq678 Length=9679 Score = 125 bits (138), Expect = 2e-23 Identities = 350/531 (66%), Gaps = 16/531 (3%) Strand=Plus/Plus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCG 22488 || ||||| ||||| |||||||| | ||||| | |||| || | | || || Sbjct 7923 ATCAAGAAGAAGGCCGATTGGGCTGTTCGTTGGATCCAGGACAAGGAGTCTACCTTTGCT 7982 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||||| |||| ||||||| ||||| || || |||||| ||| | || | Sbjct 7983 CAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGCTCTTTCGCATCC 8042 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 ||||||||| | || || |||| ||||| | ||||| || || || || ||||| || Sbjct 8043 ATCTTTTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACTTTCTCCAACGAGTTGATC 8102 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATT 22668 ||| || |||||||| || ||||||||||| || | || | || || ||| | Sbjct 8103 TCCCGTGACGAGGGTCTCCACACCGATTTTGCATGCCTCCTCT-TC----TCCCATC--T 8155 Query 22669 CATAAACTTCCATATGAA----ACTGTACTTGATATTATTACAAATGCAGTTGAACTTGA 22724 || || || | || |||| | | | | || || | || ||||| |||| Sbjct 8156 CAAGCACCGCCCAAGCAAGGCTGCTGTCCAAGCTGTCATCACTGAGGCTGTTGAGATTGA 8215 Query 22725 ACGTCTATTTATTTGC-GAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAA 22783 | | || || | ||||| | || |||| ||||||| || || | | | Sbjct 8216 GC-AGGAGTTCTTGACTGAGGCTCTTCCTTGTGCTCTCCTTGGTATGAACGCTGGCTTGA 8274 Query 22784 TGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGC 22843 ||| ||| || | || ||||| ||||| || | |||| ||||| ||| ||| Sbjct 8275 TGAAGCAATACATCGAGTTCGTTGCTGATCGCCTTCTCCTTTCCCTCGGCAATGAGAAGG 8334 Query 22844 ATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCA 22903 ||| || || | || ||||| || | ||||| || || |||| |||||||||| Sbjct 8335 TTTACAAGGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGAAAGACCA 8394 Query 22904 ATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATG 22954 | |||||||| || | |||| ||| |||||||| || ||||| |||| || Sbjct 8395 ACTTCTTCGAGAAGCGTGTTGCTGATTACCAAAAGGCCGGTGTCATGGCTG 8445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303274295413718