Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4739 93.3 4e-14 seq4373 82.4 7e-11 >seq4739 Length=56954 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || |||||||| | || || | ||||| || || | Sbjct 20907 ATGCAGATCTTCGTTAAGACCTTGACTGGAAAGACAATCACTTTGGAAGTTGAATCCTCC 20966 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || || ||||| ||||| || || || || || |||||| Sbjct 20967 GATACTATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAA 21026 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| |||| |||| || ||||||||||| || |||| | ||| | | ||| || ||| Sbjct 21027 CAGCGACTCATTTTCGCAGGCAAGCAACTTGAGGATGGCCGAACCTTGTCCGACTACAAC 21086 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| || || || ||||||| || Sbjct 21087 ATCCAAAAGGAGTCCACTCTTCATTTGGT 21115 >seq4373 Length=63444 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | |||||| ||||| ||||| || || || || || || ||| Sbjct 31598 GACACAATCGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAA 31539 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||| |||||||||||||| | | | | | ||||||| || ||| Sbjct 31538 CAGCGCTTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGTACCCTCAGCGACTACAAC 31479 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| || || || | ||| | ||| Sbjct 31478 ATCCAAAAGGAGTCGACCCTCCATCTCGTG 31449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429911115976095