Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 93.3 4e-14
seq4373 82.4 7e-11
>seq4739
Length=56954
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || || |||||||| | || || | ||||| || || |
Sbjct 20907 ATGCAGATCTTCGTTAAGACCTTGACTGGAAAGACAATCACTTTGGAAGTTGAATCCTCC 20966
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| || ||||| | || || ||||| ||||| || || || || || ||||||
Sbjct 20967 GATACTATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAA 21026
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| |||| |||| || ||||||||||| || |||| | ||| | | ||| || |||
Sbjct 21027 CAGCGACTCATTTTCGCAGGCAAGCAACTTGAGGATGGCCGAACCTTGTCCGACTACAAC 21086
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|| ||||| || || || ||||||| ||
Sbjct 21087 ATCCAAAAGGAGTCCACTCTTCATTTGGT 21115
>seq4373
Length=63444
Score = 82.4 bits (90), Expect = 7e-11
Identities = 108/150 (72%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| ||||| | |||||| ||||| ||||| || || || || || || |||
Sbjct 31598 GACACAATCGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAA 31539
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | |||| | || ||| |||||||||||||| | | | | | ||||||| || |||
Sbjct 31538 CAGCGCTTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGTACCCTCAGCGACTACAAC 31479
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|| ||||| || || || | ||| | |||
Sbjct 31478 ATCCAAAAGGAGTCGACCCTCCATCTCGTG 31449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429911115976095
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |