Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4538 246 4e-60 seq678 114 2e-20 >seq4538 Length=19519 Score = 246 bits (272), Expect = 4e-60 Identities = 1325/2072 (64%), Gaps = 63/2072 (3%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||||||||| || || || || | | || || |||||||||||||| || || ||| Sbjct 8530 GTGAATTGAATAGGTGCTGAGGCAGCCATGGTTCGGAGATAGTACATTCCAGTCTTGAGA 8471 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 61968 || | |||| || ||||||||||| || | || || | || || | || Sbjct 8470 CCCAACTTCCAACCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 8412 Query 61969 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62028 ||||| ||||| |||||| |||||| ||||| || || | || |||||||| | | Sbjct 8411 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATCTGGAC 8352 Query 62029 AATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62088 || || ||||| || ||||||| ||| || |||| ||| ||||| |||| | Sbjct 8351 GATAGTACGTTGTGAGATCTCCCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGAT 8292 Query 62089 GTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145 ||||| | || || || ||||||||||| || || || | ||||| || | ||| Sbjct 8291 GTTTGGAACATTTTGGATTGATCCACCATCAGCGATGATTCGGTTCTTCATGTTGTCAGA 8232 Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205 ||| | | | || | | | || || || || || ||||| || ||||| Sbjct 8231 CCAAAGTCCCATATCAACAAGGTCCTTCAGAAGCCATGGGTTGACAACTTGGAACTCTCC 8172 Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT-- 62263 || | || | |||| ||| || || ||||| || || | || |||| || Sbjct 8171 AGCAAGAACACGACGAGAGTAGATGTTGGAAGTATATGGCTCGA-AG---CATTCGTTGA 8116 Query 62264 -CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62321 ||||| ||||||| || ||||| |||||||| || || | ||||| || | || Sbjct 8115 ACCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAA 8056 Query 62322 GACCGTA-TGTTCTGATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCGACGGTAC 62379 |||| | || | ||| | | || | || | |||| | |||||| || | ||| Sbjct 8055 GACCATGCTGGGC-GATCTGTTGCTTCA-AGCTAGCCCAGTCCCAAAGGTCGGTAGGTGT 7998 Query 62380 AACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 62439 ||| || || || ||| || ||| ||||||| || Sbjct 7997 CTTGCCCCACATGTCATATTGAAGCTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTC 7938 Query 62440 GTATGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGG 62498 ||||| ||| | ||| || || || || | || || ||| ||| ||| || | Sbjct 7937 GTATGTTCCATGGGTCTTTGCCAGCTCGACGGATGCAGTCAAA-GCAGCGTGATAGATTG 7879 Query 62499 TTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTA-TCAAATGGATAATTTAAG 62557 | || || || | | || || | | || || ||| | || || ||| | ||| Sbjct 7878 TCTCAAAAATTTGGATGTTGAGGTGCTTAGCCTCT-GGCGACTCGAAAGGA-AGGCGAAG 7821 Query 62558 AG--AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62615 | || ||| || || || | ||||||||||||| | | || ||||| || | || Sbjct 7820 TGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAAGAGCAATTGGTCTGTGACGGAAAT 7762 Query 62616 TAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62674 | | |||| |||||||||| || || || || ||||| ||||| ||||| | || Sbjct 7761 T-GCTCTTTCTTGCTTCTGGAACTGGGTAGTAGTTGATATCAATAATCTTATTCAAGTTC 7703 Query 62675 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATCGCCCATCTATTA- 62732 |||||| |||| | || || | || || | || ||| || | | ||| || Sbjct 7702 TTGACAACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCA 7643 Query 62733 -CAA-ACATGTTCAATG--CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62788 ||| | ||||| | | ||| ||||||| ||| |||||||| || |||| | | | Sbjct 7642 TCAACATATGTTGGAAGAGCAAGTGATGCCAAATTGCAAACGGCGACTTCATCTGG-TGC 7584 Query 62789 GCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 62847 || || | | ||||| ||||| || || | |||||| || | || | || Sbjct 7583 ACAGTACTCAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTG 7524 Query 62848 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 62907 || |||||| ||| || |||||||| || || ||||| || | || || || |||| Sbjct 7523 GTTGCTCTTTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTG 7464 Query 62908 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT-TT 62966 || ||| | ||| | | ||| | | ||||||| | || || | | | || Sbjct 7463 AGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAC---AGTCTTACGGCCCATGTT 7407 Query 62967 CTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCC 63024 ||| |||||| |||||| || ||||| || || |||| | ||| || Sbjct 7406 CTCAGCCTCGTATTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACC 7347 Query 63025 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63084 |||||| || | || |||||||| | ||| || || | | || || ||||| || Sbjct 7346 AGGACACTCGTTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAA 7287 Query 63085 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63143 | ||| |||||||||||||| ||| || ||||| | || | || || ||||| Sbjct 7286 TAAATCTGGAATCCAAAGAGC-ATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGT 7228 Query 63144 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63203 |||||| || || |||||| | | | ||||| ||||| || || | ||| |||| Sbjct 7227 GGTTCTTTCGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGG 7168 Query 63204 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63263 | | | | ||||| || ||||| || |||||||| | ||||| |||||||| || ||| Sbjct 7167 CAAAAGCACCAGGACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAA 7108 Query 63264 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCAC 63323 ||| | ||| |||| ||| || ||||| | || || || || | || ||| |||| Sbjct 7107 CTCGAAGCATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAG 7048 Query 63324 TGGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379 ||||||| || | || ||| ||||| || || || || | ||||| || | Sbjct 7047 TGGCACGGATTCTGTGGAC--ATT--AAGACCGATACCACCAGCGTTCTTAGAAATCATA 6992 Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439 ||||| || || || ||||| || || || || || || ||| |||||| | || Sbjct 6991 GCGCAAGTCTTCAAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGG 6932 Query 63440 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGA 63499 ||||| || | ||| | ||| || ||| ||| | || ||||| ||||| Sbjct 6931 AAACATGATGAGAGTTGTGCTTGTGGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGG 6872 Query 63500 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTG 63558 ||||| |||| || | | ||||| |||||||| || | || ||| | || | Sbjct 6871 GTAAAGTATTTGCTGGACATCAAGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCG 6812 Query 63559 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63618 ||||| || || || |||||||| | ||| || || || | ||| |||||| | Sbjct 6811 -TGAATACCAACAGCAACACGCATAATCATATGTTGTGGACGTTCGCAAATCTTGCCATC 6753 Query 63619 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAG 63676 | | | || ||| || | || || || || || || | ||| ||||| Sbjct 6752 GAGACGGAGGAGATATGATCGCTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAA-- 6695 Query 63677 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATG 63736 || || ||||| | ||| | |||||||| | ||| || || | || |||| ||| Sbjct 6694 TCACGGTCGTACACAATGGCAGAGTTGAGCTCGGCCTCATGCTTCATGAC-ACATTCAT- 6637 Query 63737 GTAATACTT--GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATA 63794 | | ||| || ||||| | | | || ||| |||||||||||||| | ||| Sbjct 6636 ATGTTGCTTTGCTGATCATAGGTGACTCTCTCTTGTTTCGAGGATTGACATAGTGGTATA 6577 Query 63795 AATCCTCCATCACTTCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 63853 | || || || | | | ||| | || || || | ||||| || || || || || Sbjct 6576 AGTCGGAAATAAC-GCTCGAGAATTGCTTCTTGGTCTGCTTGTGGAGGTTGGAAACTGCA 6518 Query 63854 ATTCTAGCGGCTAGAATGGCATAATCCGGATG 63885 ||||| || || || ||||||||||| ||||| Sbjct 6517 ATTCTTGCAGCGAGGATGGCATAATCGGGATG 6486 >seq678 Length=9679 Score = 114 bits (126), Expect = 2e-20 Identities = 333/512 (65%), Gaps = 3/512 (1%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 |||||||| ||| | ||||| || ||||| || || || || || | | || || || Sbjct 8428 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTC 8369 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 |||||||| |||||||| |||| ||| || |||| || | | || | | | Sbjct 8368 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGGGAAAGGAGA 8309 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 | | ||| || || || || || ||| ||||||| || ||||| || | || Sbjct 8308 AGGCGATCAGCAACGAACTCGATGTATTGCTTCATCAAGCCAGCGTTCATACCAAGGAGA 8249 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 | ||||||||| |||| | || || || ||||| || || || || || | | Sbjct 8248 GCACAAGGAAGAGCCTCAGTCAAGAACTCCTGCTCAATCTCAACAGCCTCAGTGATGACA 8189 Query 32610 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 32669 | | || | | | || || | | | | ||| || | | ||||| ||| Sbjct 8188 GCTTGGACAGCAGCCTTGCTTGGGCGGTGCTTGAGATGGGAGAAGAGGAGGCATGCAAAA 8129 Query 32670 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 32729 ||| ||| ||||||||||| | || || |||||||| || || || || | ||| Sbjct 8128 TCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGACCAGCCATA 8069 Query 32730 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 32789 || |||||||| || | |||||| ||||| || || || ||| |||||| || || || Sbjct 8068 AGACCACGCTTCTTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAGATACCCTCA 8009 Query 32790 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTT 32846 || || |||||||||| ||| | | || | | | |||| || ||||| Sbjct 8008 ACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGACTCCTTGTCCTGGATCCAACGA 7949 Query 32847 TGAGCCCAATCGGCCTTCTTTTTTACACAAGG 32878 |||||||||||||||||| || | ||||| Sbjct 7948 ACAGCCCAATCGGCCTTCTTCTTGATGCAAGG 7917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633594386020400