Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 120 3e-22
>seq4739
Length=56954
Score = 120 bits (132), Expect = 3e-22
Identities = 170/238 (71%), Gaps = 1/238 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||||||||| || || | || || | || || ||||| ||
Sbjct 21135 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAGACAATTACGTTAGAGGTTGAGTCTTCG 21194
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || | ||| || ||| || || || || |||||||| ||||||
Sbjct 21195 GACACAATTGATAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATTCCACCAGACCAA 21254
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | ||||| || || || ||||| || |||| ||| || | |||| |||||
Sbjct 21255 CAGCGATTGATTTTCGCTGGTAAGCAATTGGAGGATGGTCGTACCCTTAGCGACTACAAC 21314
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA-AATTATTAT 25235
|||||||| || ||| || || || ||||| | ||| | |||||| ||| |||||
Sbjct 21315 ATTCAAAAGGAGAGCACCCTGCACTTGGTGCTTCGTCTACGTGGAGGACAATGATTAT 21372
Score = 87.8 bits (96), Expect = 2e-12
Identities = 145/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070
|| ||||||||||| || || |||| || |||| || || || || ||||| || ||
Sbjct 20691 GTCAAGACTTTGACTGGCAAGACCATTACTCTCGAGGTCGAATCATCCGACACCATTGAC 20750
Query 25071 TCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTAT 25129
| ||| | || | ||| || || || || |||||||| |||||||| || ||||
Sbjct 20751 AACGTTAAGTCGAAGATTCA-GGATAAGGAGGGTATTCCACCGGACCAACAACGTCTTAT 20809
Query 25130 TTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGA 25189
|| || || |||||| | || || | || ||| | || ||||| || ||||| ||
Sbjct 20810 CTTCGCTGGTAAACAACTTGAGGACGGACGAACTCTCTCGGACTACAACATCCAAAAGGA 20869
Query 25190 ATCCACGCTACATTTAGTGCTAAGGCT 25216
|||||| || || || || || || ||
Sbjct 20870 ATCCACACTCCACTTGGTTCTCAGACT 20896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433302919652435
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |