Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4739 120 3e-22 >seq4739 Length=56954 Score = 120 bits (132), Expect = 3e-22 Identities = 170/238 (71%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | || || | || || ||||| || Sbjct 21135 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAGACAATTACGTTAGAGGTTGAGTCTTCG 21194 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| || || || || |||||||| |||||| Sbjct 21195 GACACAATTGATAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATTCCACCAGACCAA 21254 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || || || ||||| || |||| ||| || | |||| ||||| Sbjct 21255 CAGCGATTGATTTTCGCTGGTAAGCAATTGGAGGATGGTCGTACCCTTAGCGACTACAAC 21314 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA-AATTATTAT 25235 |||||||| || ||| || || || ||||| | ||| | |||||| ||| ||||| Sbjct 21315 ATTCAAAAGGAGAGCACCCTGCACTTGGTGCTTCGTCTACGTGGAGGACAATGATTAT 21372 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 || ||||||||||| || || |||| || |||| || || || || ||||| || || Sbjct 20691 GTCAAGACTTTGACTGGCAAGACCATTACTCTCGAGGTCGAATCATCCGACACCATTGAC 20750 Query 25071 TCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTAT 25129 | ||| | || | ||| || || || || |||||||| |||||||| || |||| Sbjct 20751 AACGTTAAGTCGAAGATTCA-GGATAAGGAGGGTATTCCACCGGACCAACAACGTCTTAT 20809 Query 25130 TTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGA 25189 || || || |||||| | || || | || ||| | || ||||| || ||||| || Sbjct 20810 CTTCGCTGGTAAACAACTTGAGGACGGACGAACTCTCTCGGACTACAACATCCAAAAGGA 20869 Query 25190 ATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||| || || || || || || || Sbjct 20870 ATCCACACTCCACTTGGTTCTCAGACT 20896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433302919652435