Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4739 138 1e-27 >seq4739 Length=56954 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| || || || || || || ||||| | ||||| ||| || || Sbjct 20907 ATGCAGATCTTCGTTAAGACCTTGACTGGAAAGACAATCACTTTGGAAGTTGAATCCTCC 20966 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | || || || ||||||||||||||||| ||||| |||||| Sbjct 20967 GATACTATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAA 21026 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| || | |||||| ||| ||| | ||||| |||||| Sbjct 21027 CAGCGACTCATTTTCGCAGGCAAGCAACTTGAGGATGGCCGAACCTTGTCCGACTACAAC 21086 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| || ||||| | ||||| || Sbjct 21087 ATCCAAAAGGAGTCCACTCTTCATTTGGT 21115 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290 || || ||||| || || || || | ||||| || || ||| | |||| ||| | ||| Sbjct 20691 GTCAAGACTTTGACTGGCAAGACCATTACTCTCGAGGTCGAATCATCCGACACCATTGAC 20750 Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350 | | || || ||||| || ||||||||||||||||| || |||||||||||||| Sbjct 20751 AACGTTAAGTCGAAGATTCAGGATAAGGAGGGTATTCCACCGGACCAACAACGTCTTATC 20810 Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 || || || ||||| | ||||| || || |||| || |||||||| ||||| ||| Sbjct 20811 TTCGCTGGTAAACAACTTGAGGACGGACGAACTCTCTCGGACTACAACATCCAAAAGGAA 20870 Query 22411 TCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| | || || ||| | || | || || ||| Sbjct 20871 TCCACACTCCACTTGGTTCTCAGACTCCGTGGTGGT 20906 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || ||||| || | ||||| ||||| || | | |||||| | ||| | |||| Sbjct 20420 ACTGGTAAGACTATTACTCTCGAAGTAGAGTCTTCTGATACCATCGACAACGTCAAGTCC 20479 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||| || ||||| || || |||||||| | || || |||||||| Sbjct 20480 AAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAACAACGCTTGATCTTCGCCGGCAAG 20539 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | ||||| || ||| | ||||||||||||||||| || || || || Sbjct 20540 CAGCTCGAGGACGGTCGTACCCTTTCCGATTACAACATTCAGAAGGAGTCTAC 20592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419703706799185