Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1091 91.5 3e-13
seq4562 89.7 1e-12
seq4538 86.0 1e-11
>seq1091
Length=7025
Score = 91.5 bits (100), Expect = 3e-13
Identities = 95/122 (78%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||| || || ||||||||||| || || ||||| | || ||| |||
Sbjct 5774 CTCACTCCCGTATGTTGGGTCTTTCTGGTGGTCAACGTGTCAAGGTCGTTCTCGCTGCAT 5833
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
||||| ||||||| |||||| |||||||||||||||||||||||||||| |||||||
Sbjct 5834 GCTCT-TGGCAACGACCTCACTTGATCGTTCTCGACGAGCCTACCAACTACTTGGACCGT 5892
Query 280821 GA 280822
||
Sbjct 5893 GA 5894
>seq4562
Length=60599
Score = 89.7 bits (98), Expect = 1e-12
Identities = 134/188 (71%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233
||||||| ||||||||| || || || || | |||||| |||| |||||||||| ||
Sbjct 16266 TCATTGGTGGCAATGGTGCTGGAAAATCCACTTTGATCAAACTCCTTACTGGCGAGA-CC 16208
Query 280234 AGGCCACTGAGGGGT-CCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292
| || ||| ||| || ||||||||| ||| |||| || | |||| || |||
Sbjct 16207 ATTCCTACGAGTGGTAGTGTCGAGAAGCATCCTAACTTGCGAATTGGTTACATCAAGCAG 16148
Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352
|||||| | | ||| | || | || || || | || |||||||| ||| |||| |||
Sbjct 16147 CACGCTCTTGAACACGTGGAAATGCATCTCGAAAAAACACCTAACCAGTACCTTCAATGG 16088
Query 280353 CGCTATGC 280360
|| || ||
Sbjct 16087 CGTTACGC 16080
>seq4538
Length=19519
Score = 86.0 bits (94), Expect = 1e-11
Identities = 174/253 (69%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 293122 TGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGT-CTTCATAGAGATCTC 293180
||||| | || ||||||||||||||||| | | | | || | | | ||||||||
Sbjct 8389 TGATCAATGAATGCACCACGATCAGCAGCCATCTGGACGATAGTACGTTGT-GAGATCTC 8331
Query 293181 CCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTGGATAGA 293240
||| |||||||| | ||||||| ||||| | ||| ||| || ||||| ||
Sbjct 8330 CCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGATGTTTGGAACATTTTGGATTGA 8271
Query 293241 CCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACC-AAGTCCCACGAGCAATGA 293299
|| || | || || || |||||||||| | || |||| |||||||| | ||| |
Sbjct 8270 TCCACCATCAGCGATGATTCGGTTCTTCATGTTGTCAGACCAAAGTCCCA-TATCAACAA 8212
Query 293300 GCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGGCTGT 293359
| || | ||| | | ||||||||| ||||||| ||||| ||| ||||| ||
Sbjct 8211 GGTCCTTCAGAAGCCATGGGTTGACAACTTGGAACTCTCCAGCAAGAACACGACGAGAGT 8152
Query 293360 AAATGTTCGAAGT 293372
| ||||| |||||
Sbjct 8151 AGATGTTGGAAGT 8139
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027774259663909
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |