Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1091 91.5 3e-13 seq4562 89.7 1e-12 seq4538 86.0 1e-11 >seq1091 Length=7025 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/122 (78%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| || || ||||||||||| || || ||||| | || ||| ||| Sbjct 5774 CTCACTCCCGTATGTTGGGTCTTTCTGGTGGTCAACGTGTCAAGGTCGTTCTCGCTGCAT 5833 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||||| |||||| |||||||||||||||||||||||||||| ||||||| Sbjct 5834 GCTCT-TGGCAACGACCTCACTTGATCGTTCTCGACGAGCCTACCAACTACTTGGACCGT 5892 Query 280821 GA 280822 || Sbjct 5893 GA 5894 >seq4562 Length=60599 Score = 89.7 bits (98), Expect = 1e-12 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 ||||||| ||||||||| || || || || | |||||| |||| |||||||||| || Sbjct 16266 TCATTGGTGGCAATGGTGCTGGAAAATCCACTTTGATCAAACTCCTTACTGGCGAGA-CC 16208 Query 280234 AGGCCACTGAGGGGT-CCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292 | || ||| ||| || ||||||||| ||| |||| || | |||| || ||| Sbjct 16207 ATTCCTACGAGTGGTAGTGTCGAGAAGCATCCTAACTTGCGAATTGGTTACATCAAGCAG 16148 Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352 |||||| | | ||| | || | || || || | || |||||||| ||| |||| ||| Sbjct 16147 CACGCTCTTGAACACGTGGAAATGCATCTCGAAAAAACACCTAACCAGTACCTTCAATGG 16088 Query 280353 CGCTATGC 280360 || || || Sbjct 16087 CGTTACGC 16080 >seq4538 Length=19519 Score = 86.0 bits (94), Expect = 1e-11 Identities = 174/253 (69%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 293122 TGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGT-CTTCATAGAGATCTC 293180 ||||| | || ||||||||||||||||| | | | | || | | | |||||||| Sbjct 8389 TGATCAATGAATGCACCACGATCAGCAGCCATCTGGACGATAGTACGTTGT-GAGATCTC 8331 Query 293181 CCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTGGATAGA 293240 ||| |||||||| | ||||||| ||||| | ||| ||| || ||||| || Sbjct 8330 CCAAACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGATGTTTGGAACATTTTGGATTGA 8271 Query 293241 CCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACC-AAGTCCCACGAGCAATGA 293299 || || | || || || |||||||||| | || |||| |||||||| | ||| | Sbjct 8270 TCCACCATCAGCGATGATTCGGTTCTTCATGTTGTCAGACCAAAGTCCCA-TATCAACAA 8212 Query 293300 GCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGGCTGT 293359 | || | ||| | | ||||||||| ||||||| ||||| ||| ||||| || Sbjct 8211 GGTCCTTCAGAAGCCATGGGTTGACAACTTGGAACTCTCCAGCAAGAACACGACGAGAGT 8152 Query 293360 AAATGTTCGAAGT 293372 | ||||| ||||| Sbjct 8151 AGATGTTGGAAGT 8139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027774259663909