Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 127 2e-24
>seq4739
Length=56954
Score = 127 bits (140), Expect = 2e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| ||||| | ||| || || | || ||||| ||||| |||||||| ||
Sbjct 20908 ATACCACCACGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCC 20849
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| || || |||||||||||||||||| |||| ||||| |||||||||||
Sbjct 20848 GAGAGAGTTCGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGT 20789
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || || || || |||||| || | | |||| |||||||| ||||||
Sbjct 20788 GGAATACCCTCCTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCG 20729
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370
|| || | || | || ||||| |||| ||| || ||
Sbjct 20728 ACCTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTGAC 20691
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251
|| |||||||||||||| ||||| | |||||| ||| || | ||| ||||||||| |
Sbjct 21325 TCCTTTTGAATGTTGTAGTCGCTAAGGGTACGACCATCCTCCAATTGCTTACCAGCGAAA 21266
Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311
|| | ||||||||||| || ||||| || || || || ||||| || | |
Sbjct 21265 ATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATCTTGGACTTGACATTA 21206
Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371
|||| ||||| | || || || || | || | || ||||| |||| ||| || |||
Sbjct 21205 TCAATTGTGTCCGAAGACTCAACCTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACA 21146
Query 114372 AAAATCTGCAT 114382
|| ||||||||
Sbjct 21145 AAGATCTGCAT 21135
Score = 86.0 bits (94), Expect = 5e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || || || | ||||| || || |||||||||||||||
Sbjct 20625 ATACCACCACGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCG 20566
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| |||||| || || || || || || ||| |||| | || |||||||| |||
Sbjct 20565 GAAAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGTTGGTCTGGA 20506
Query 114273 GGAATGCCTTCTTTGTC 114289
||||||||||| |||||
Sbjct 20505 GGAATGCCTTCCTTGTC 20489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420110083277388
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |