Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq4739 127 2e-24 >seq4739 Length=56954 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| ||||| | ||| || || | || ||||| ||||| |||||||| || Sbjct 20908 ATACCACCACGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCC 20849 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || || |||||||||||||||||| |||| ||||| ||||||||||| Sbjct 20848 GAGAGAGTTCGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGT 20789 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || || || |||||| || | | |||| |||||||| |||||| Sbjct 20788 GGAATACCCTCCTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCG 20729 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 || || | || | || ||||| |||| ||| || || Sbjct 20728 ACCTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTGAC 20691 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || |||||||||||||| ||||| | |||||| ||| || | ||| ||||||||| | Sbjct 21325 TCCTTTTGAATGTTGTAGTCGCTAAGGGTACGACCATCCTCCAATTGCTTACCAGCGAAA 21266 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || | ||||||||||| || ||||| || || || || ||||| || | | Sbjct 21265 ATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATCTTGGACTTGACATTA 21206 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| ||||| | || || || || | || | || ||||| |||| ||| || ||| Sbjct 21205 TCAATTGTGTCCGAAGACTCAACCTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACA 21146 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 21145 AAGATCTGCAT 21135 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | ||||| || || ||||||||||||||| Sbjct 20625 ATACCACCACGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCG 20566 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| || || || || || || ||| |||| | || |||||||| ||| Sbjct 20565 GAAAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGTTGGTCTGGA 20506 Query 114273 GGAATGCCTTCTTTGTC 114289 ||||||||||| ||||| Sbjct 20505 GGAATGCCTTCCTTGTC 20489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420110083277388