Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4538 156 8e-33 >seq4538 Length=19519 Score = 156 bits (172), Expect = 8e-33 Identities = 472/723 (65%), Gaps = 12/723 (2%) Strand=Plus/Minus Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782 ||||| |||||||| ||||| ||||| || |||||| || |||| || || || Sbjct 7580 GTACTCAACAATCTCCGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTT 7521 Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGC 244842 | ||| ||||||||| ||||||||||||||||| || ||||||||| ||| || Sbjct 7520 GCTCTTTCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGC 7461 Query 244843 GACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC 244902 |||| | || ||| || | ||||||||| ||| | || || || ||| || Sbjct 7460 TTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGACAGTCTTACGGCCCATGTTCTCAGC 7401 Query 244903 CTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA 244962 |||||| |||| ||||| ||||| || | || || | | || || || Sbjct 7400 CTCGTATTTCTCATACAAAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACA 7341 Query 244963 CGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTC 245022 | |||||||| | |||| || | | | || | || |||||| | || Sbjct 7340 CTCGTTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATC 7281 Query 245023 GGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTT 245082 || ||||| || || | ||| || || | || | ||| ||| || |||||| Sbjct 7280 TGGAATCCAAAGAGCATAGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTT 7221 Query 245083 CCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGC 245142 | || || | || |||||||| || ||||||| ||||| | ||||| || | || Sbjct 7220 TCGGAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGC 7161 Query 245143 GCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAG 245202 || || |||||||| || ||||| || || || || |||||| | || || Sbjct 7160 ACCAGGACGCTTGTTACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAG 7101 Query 245203 GGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCT 245262 |||| || || ||||| |||| ||||| || || |||||||| || || | | Sbjct 7100 CATAGGAACAATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAGGCTCCAGTGGCACG 7041 Query 245263 GAGGTTGCTGATGGACATG----CCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGC 245318 || | ||| ||||||| || | || || |||| ||| || || | ||||| Sbjct 7040 GA---TTCTG-TGGACATTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAG 6985 Query 245319 TCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGG 245378 |||| | ||||| || || || ||||||||| |||||||| || || || || | Sbjct 6984 TCTTCAAAGTGTCATAAATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATG 6925 Query 245379 AGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTG--GGGCTGGCGTGGGTAAA 245436 | || || || | |||| || | || || | | | |||| || |||||||||||| Sbjct 6924 ATGAGAGTTGTG-CTTGTGGA-GTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGTAAA 6867 Query 245437 GTA 245439 ||| Sbjct 6866 GTA 6864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944283141664240