Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 140 8e-28
seq678 89.7 1e-12
>seq4739
Length=56954
Score = 140 bits (154), Expect = 8e-28
Identities = 161/217 (74%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| |||||||| || || | || | ||| ||| |||||||| || ||||| | |
Sbjct 20905 CCACCACGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAG 20846
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || |||||||| || | |||||| || |||||||| ||||| ||||| |||
Sbjct 20845 AGAGTTCGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGA 20786
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || |||||||| || |||| || ||||| || || | ||| ||||| ||
Sbjct 20785 ATACCCTCCTTATCCTGAATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACC 20726
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463
||||| || || ||||| || |||| |||||||||||
Sbjct 20725 TCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTGACGA 20689
Score = 104 bits (114), Expect = 6e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
||||| || || || | ||| || | || | ||||| || ||||| || || ||||||
Sbjct 21364 TGTCCTCCACGTAGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCG 21305
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
|| || || || || || ||||| || || ||||| |||| |||||||| |
Sbjct 21304 CTAAGGGTACGACCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGT 21245
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || ||||||||||| || | || || || || || | || || ||
Sbjct 21244 GGAATACCCTCCTTATCCTGGATCTTGGACTTGACATTATCAATTGTGTCCGAAGACTCA 21185
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | ||| || ||||| || |||| ||||||||| || ||||||||
Sbjct 21184 ACCTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135
>seq678
Length=9679
Score = 89.7 bits (98), Expect = 1e-12
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAAT 269178
|||||| | ||| ||| | || ||| || | | |||||||| || | | |||||
Sbjct 8220 GAGTTCTTGACTGAGGCTCTTCCTTGTGCTCTCCTTGGTATGAACGCTGGCTTGATGAAG 8279
Query 269179 CAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTAC 269238
||||| ||||| ||||| |||||||| | || | ||||| ||||||| || |||
Sbjct 8280 CAATACATCGAGTTCGTTGCTGATCGCCTTCTCCTTTCCCTCGGCAATGAGAAGGTTTAC 8339
Query 269239 AATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTC 269298
|| || || |||| ||| ||||| || || || | |||||||| ||||||
Sbjct 8340 AAGGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGAAAGACCAACTTC 8399
Query 269299 TTCGAAAAGCGTGT 269312
||||| ||||||||
Sbjct 8400 TTCGAGAAGCGTGT 8413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179582622084822
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |