Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq678 93.3 9e-14 >seq678 Length=9679 Score = 93.3 bits (102), Expect = 9e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 243503 TCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGC 243562 ||||||| || || ||||| | || |||| ||| | || ||| |||| || | Sbjct 8191 TCATCACTGAGGCTGTTGAGATTGAGCAGGAGTTCTTGACTGAGGCTCTTCCTTGTGCTC 8250 Query 243563 TTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTT 243622 | |||| |||||| ||| | ||| || |||||||| ||||| || || ||| || Sbjct 8251 TCCTTGGTATGAACGCTGGCTTGATGAAGCAATACATCGAGTTCGTTGCTGATCGCCTTC 8310 Query 243623 TCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGC 243682 || | | || || ||||||| || ||||| ||||| || | ||| |||||| Sbjct 8311 TCCTTTCCCTCGGCAATGAGAAGGTTTACAAGGTTGCCAACCCATTCGACTTCATGGAGA 8370 Query 243683 TCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 ||| || ||| || || || ||||||||||| |||||||| |||||| ||| Sbjct 8371 ACATCTCTCTTGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTTGCTGATTACCAA 8426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102812893543150