Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4538 196 6e-45 seq678 95.1 1e-14 >seq4538 Length=19519 Score = 196 bits (216), Expect = 6e-45 Identities = 1113/1756 (63%), Gaps = 49/1756 (3%) Strand=Plus/Minus Query 113588 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 113647 ||| | | |||||| |||||||| || |||||||| ||| |||||| | | |||| Sbjct 8506 GCCATGGTTCGGAGATAGTACATTCCAGTCTTGAGACCCAACTTCCAACCTGCGAAATGC 8447 Query 113648 ATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 113707 || || | ||| | ||||| | |||| || |||||| ||| |||||| Sbjct 8446 ATACTGGTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGA 8387 Query 113708 TCGATGAAGCGTCCACGATCCGCCGCCATATCAATCACA-TCCTTCATCTTGATTTCCCA 113766 || ||||| |||||||| || ||||| | | | | | | | | ||| ||||| Sbjct 8386 TCAATGAATGCACCACGATCAGCAGCCATCTGGACGATAGTACGTTGTGA-GATCTCCCA 8328 Query 113767 CACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCC 113826 ||||| |||| || ||| |||||| ||||||| | | ||||||||| || || Sbjct 8327 AACAGTCTTGTAAAGAGCCTTGATATCAGCTGGGATGTTTGGAACATTTTGGATTGATCC 8268 Query 113827 ACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATC 113886 ||| | || || | | |||||| | | ||||| || || || | || || Sbjct 8267 ACCATCAGCGATGATTCGGTTCTTCATGTTGTCAGACCAAAGTCCCATATCAACAAGGTC 8208 Query 113887 CTCCACGAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TA 113943 || || || ||| | ||||||| ||||| || || || || | ||| || Sbjct 8207 CTTCAGAAGCCATGGGT--TGACAACTTGGAACTCTCCAGCAAGAACACGACG-AGAGTA 8151 Query 113944 GATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGC-GGTGGAGG 114002 ||| |||| || |||||||| ||||| || ||| |||||||| || | | ||| || Sbjct 8150 GATGTTGGAAGTATATGGCTCGAAGCATTCGTTGA-ACCCAAGAATTTGACTGGTACTGG 8092 Query 114003 CTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCT 114062 | || ||||| || || | ||| | ||||| || ||||| | | || ||| || Sbjct 8091 CAGTTGGCATAGGAGCAACGAGCAAACTGTTGCGAAGACCATGCTGGGCGATCTGTTGCT 8032 Query 114063 TGAGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGA 114119 | | | ||||||| | || | ||||| ||| ||||| ||| | || | Sbjct 8031 TCAAGCTAGCCCAGTCCCAAAGGTCGGTAGGTGTCTTGCCC---CACATGTCATATTGAA 7975 Query 114120 GGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCA 114179 | || | |||||| || || || ||| |||||||||||| || | || |||| Sbjct 7974 GCTCGCCCTTGGAGGCAGGTGAGCCTTCATATGTCTCGTATGTTCCATGGGTCTTTGCCA 7915 Query 114180 ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 114239 ||| | || | || |||||||| |||||||||||||| | || | Sbjct 7914 GCTCGACGGATGCAGTCAAAGCAGCGTGATAGATTGTCTCAAAAATTTGGATGTTGAGGT 7855 Query 114240 CCTTGGCCTCGTCGGAATCAAACGCGAGTCG--GCACAAAATAAATACATCCGCGAGACC 114297 ||| ||||| || || || | || || | | || || |||| || ||||| Sbjct 7854 GCTTAGCCTCTGGCGACTCGAAAGGAAGGCGAAGTGCCAAGAAAG--CATCAGCAAGACC 7797 Query 114298 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA-CGG 114356 ||| ||||| || ||||||| | || | | ||| ||||| || ||| | | | Sbjct 7796 TTGAACACCAAGAGCAATTGGTCTGTGACGGAAATTGCTCTTTCTTGCT-TCTGGAACTG 7738 Query 114357 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 114416 | || | || |||| |||| | |||| | || ||| ||||| | || || | Sbjct 7737 GGTAGTAGTTGATATCAATAATCTTATTCAAGTTCTTGACAACAACTTGGCAGACCTCGT 7678 Query 114417 GAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 114476 ||||||| | | | ||| || || |||| ||||| ||||| | ||||| || | || Sbjct 7677 GAAGCTTCTGGAAGTCATAAGTGGCGGTCTTTTCATCAACATATGTTGGAAGAGCAAGTG 7618 Query 114477 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACA 114536 | |||| ||| || || | | ||||| || |||||| | ||| ||||| |||| Sbjct 7617 ATGCCAAATTGCAAACGGCGACTTCATCTGGTGCACAGTACTCAACAATCTCCGTGCACA 7558 Query 114537 AATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 114596 || || || ||||| || | |||||| || || |||| ||| || ||||||| Sbjct 7557 GGTTGGAGCTTCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCAGGCATCCT 7498 Query 114597 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CA 114655 |||| |||||| | || | || ||||| || || | | |||||||| | ||| | | Sbjct 7497 TGTAGAGCATGAAAGGGTTTCCGGTCTCGGTCTGAGCTTCGAGAATAGAGTACCAAAGCT 7438 Query 114656 TCGGCGGCTGGCACAGTGGCGTTGGCTCGCCC-----CTCCTCCTCGTACTTTGTGTAGA 114710 | | | || | ||||| | | | |||| ||| ||||||| || || | Sbjct 7437 TTTGAGCCTTG-ACAGT--CTTACG---GCCCATGTTCTCAGCCTCGTATTTCTCATACA 7384 Query 114711 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 114770 || |||||||| ||||| | || | | || || || | ||||| | | Sbjct 7383 AAGCCTCAAACTCATCACCGTAAACGTCAGCCAAACCAGGACACTCGTTAGGGCACATCA 7324 Query 114771 GAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTG 114830 | ||| | | || ||||||||||||||||| | ||||| ||||| ||||| Sbjct 7323 ATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAATAAATCTGGAATCCAAAGAGCAT 7264 Query 114831 AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 114890 |||| ||||| || ||| | ||||| | || || || || | || | || | Sbjct 7263 AGAAAAGATCACGGGCGCGGACCTCTTCCTTTCCGTGGTTCTTTCGGAGGTCAAGGAACT 7204 Query 114891 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG----- 114945 | | || ||| |||||||| || || ||||| | || | | || | |||| Sbjct 7203 CAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCACC---AGGACGCTTGT 7147 Query 114946 -ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATAC 115004 |||| |||| | ||||| || || ||| || || || |||||||| |||| || | Sbjct 7146 TACCACCCTGATCAACATATCTGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACAATTC 7087 Query 115005 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACT-TATTGGCTCTGACATCATGGATG 115063 | | || | || ||||| || ||| || || | |||| | || |||| Sbjct 7086 CGTTGGAGTTTCCGTTTGTACCAGCAAT-GTAGGCTCCAGTGGCACGGATTCTGTGGACA 7028 Query 115064 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 115123 | | ||| ||||| || || ||| || || ||||| | | | | || | || Sbjct 7027 TTAAGACCGATACCACCAGCGTTCTTAGAAATCATAGCGCAAGTCTTCAAAGTGTCATAA 6968 Query 115124 ATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTT 115183 || || || || ||| |||| | |||| ||||| || || | ||||| | Sbjct 6967 ATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAACATGATGAGAGTTGTGCTTGT 6908 Query 115184 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCT 115241 || |||||||| || || ||||| | |||||| | || || ||| ||||||| Sbjct 6907 GGAGTACCAGCAGCAAAAAGTGTTGGAGAGGCGTGGGT-AAAGTA-TTTGCTGGACATCA 6850 Query 115242 TATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 115301 | ||||||||| | | | || ||| | || ||||||||||| | | || |||| Sbjct 6849 AGTTGTAGGTCTCAATGGCAGCCTCAATATTATCACCGTGAATACCAACAGCAACACGCA 6790 Query 115302 TAAACATGTATTGGGG 115317 ||| ||| | ||| || Sbjct 6789 TAATCATATGTTGTGG 6774 >seq678 Length=9679 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || |||||||||||||||||||||||| | || || ||||| || || Sbjct 8134 GCAAAATCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAAGTAAGACCA 8075 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 | ||| ||||| |||||||||||||| || || | || || || |||||||| Sbjct 8074 GCCATAAGACCACGCTTCTTCAACCAAAAGATGGATGCGAAAGAGCCACTAAAGAAGATA 8015 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 126206 ||||| ||| || || |||| ||||| | |||||||| Sbjct 8014 CCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGG 7975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597318139596920