Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 107 2e-18
>seq4739
Length=56954
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
||||| | || ||| | |||||| |||| ||||||||||||||||| ||||| ||
Sbjct 21361 CCTCCACGTAGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCTA 21302
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
|| || || | || || | |||||||||||||| || | |||||| ||||| | |||
Sbjct 21301 AGGGTACGACCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGGA 21242
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161
| | |||||| ||| ||| || |||| | | | ||||| || || ||
Sbjct 21241 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTATCAATTGTGTCCGAAGACTCAACC 21182
Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | ||| || || ||||| || | ||||| |||||||| |||||
Sbjct 21181 TCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135
Score = 89.7 bits (98), Expect = 6e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| || | |||| |||||||| || ||||| || | ||||| || |||| ||
Sbjct 20887 ACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCCTCA 20828
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
|| || ||||||||||| || || || || ||||| | ||| | | |||||| ||| ||
Sbjct 20827 AGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGTGGAATACCCTCCTTATCC-TG 20769
Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
| | || | | | ||| | | | |||||| ||||| || |||| || ||||| ||
Sbjct 20768 AATCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGAGTAATGGTCTT 20709
Query 42179 GCCCGTTAGCGTCTTTAC 42196
||| || | ||||| ||
Sbjct 20708 GCCAGTCAAAGTCTTGAC 20691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543180553530160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |