Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4538 154 1e-32 >seq4538 Length=19519 Score = 154 bits (170), Expect = 1e-32 Identities = 382/576 (66%), Gaps = 4/576 (1%) Strand=Plus/Plus Query 94022 ACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCG 94081 |||| || || ||||| | | ||||||| | ||||||| || ||||||| | Sbjct 7006 ACGCTGGTGGTATCGGTCTTAATGTCCACAGAATCCGTGCCACTGGAGCCTACATTGCTG 7065 Query 94082 GTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGC 94141 |||| || || | ||||||||| | || |||||||| || || ||||||||| | || Sbjct 7066 GTACAAACGGAAACTCCAACGGAATTGTTCCTATGCTTCGAGTTTTCAACAACACCGCCA 7125 Query 94142 GCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCT 94201 | || || || ||||||||| | | | ||| |||| || |||| || ||||| | Sbjct 7126 GATATGTTGATCAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATCTACCTTGAGCCAT 7185 Query 94202 GGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGA 94261 ||||||| || || | ||| | ||||| |||||||||||||| || || || Sbjct 7186 GGCACGCTGATGTCTTTGAGTTCCTTGACCTCCGAAAGAACCACGGAAAGGAAGAGGTCC 7245 Query 94262 GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGA 94321 | ||| | || || ||||| ||||| ||| | ||||| | || ||||| || || || | Sbjct 7246 GCGCCCGTGATCTTTTCTATGCTCTTTGGATTCCAGATTTATTCATGAAGCGTGTTGAAA 7305 Query 94322 AAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTT--G 94379 | ||| | ||||| | | || || || || ||||| || || | ||||||| | Sbjct 7306 AGAACCTTGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCTGACGTTTACG 7365 Query 94380 TGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGT 94439 ||| | | ||||| | ||||||| ||||| | || || || | | ||| Sbjct 7366 GTGAT-GAG-TTTGAGGCTTTGTATGAGAAATACGAGGCTGAGAACATGGGCCGTAAGAC 7423 Query 94440 TATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCC 94499 | | | ||| ||||| ||| | || | || | ||| ||||| || | || Sbjct 7424 TGTCAAGGCTCAAAAGCTTTGGTACTCTATTCTCGAAGCTCAGACCGAGACCGGAAACCC 7483 Query 94500 CTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGAT 94559 | ||| | | |||||| | |||| ||| ||||||| || |||| || || Sbjct 7484 TTTCATGCTCTACAAGGATGCCTGCAACCGAAAGAGCAACCAGAAGAACCTTGGTACCAT 7543 Query 94560 CAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTA 94595 | ||||| || |||||||| |||||||| ||||| Sbjct 7544 CCGAAGCTCCAACCTGTGCACGGAGATTGTTGAGTA 7579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494693831994040