Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 102 8e-17
seq4373 89.7 5e-13
seq1669 89.7 5e-13
>seq4739
Length=56954
Score = 102 bits (112), Expect = 8e-17
Identities = 135/184 (73%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| |||||||| ||||||||||| | ||| || |||||| ||||||||||| |
Sbjct 20872 GATTCCTTTTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCCTCAAGTTGTTTACCAGCG 20813
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| ||||| ||||||||||| || ||||| || || || ||| | || | ||||
Sbjct 20812 AAGATAAGACGTTGTTGGTCCGGTGGAATACCCTCCTTATC-CTGAATCTTCGACTTAAC 20754
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | |||||||| || || ||||||| || | || || ||||||| ||| |
Sbjct 20753 GTTG-TCAATGGTGTCGGATGATTCGACCTCGAGAGTAATGGTCTTGCCAGTCAAAGTCT 20695
Query 138599 TTAC 138602
| ||
Sbjct 20694 TGAC 20691
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||||||||||||||||||||| | ||||| ||||| | ||| ||||| | |
Sbjct 21326 CTCCTTTTGAATGTTGTAGTCGCTAAGGGTACGACCATCCTCCAATTGCTTACCAGCGAA 21267
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542
|| | ||||||||||| || || ||||| || || || ||| || || | |
Sbjct 21266 AATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATCTTGGACTTGACATT 21207
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | ||||| | ||||| ||||| | ||| | || || || |||| ||| || ||
Sbjct 21206 ATCAATTGTGTCCGAAGACTCAACCTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGAC 21147
Query 138603 AAAAATCTGCAT 138614
||| ||||||||
Sbjct 21146 AAAGATCTGCAT 21135
>seq4373
Length=63444
Score = 89.7 bits (98), Expect = 5e-13
Identities = 131/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || | ||| | | | ||||||||||| ||||||||||||||
Sbjct 31432 CCTCCACGGAGACGGAGCACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCTG 31491
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| ||| |||||||| || |||| |||| | ||||||||||| || ||
Sbjct 31492 AGGGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGGG 31551
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || ||| | |||| || | ||||| | ||||| ||
Sbjct 31552 ATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTG-TCGATTGTGTCAGAAGACTCAAC 31610
Query 138567 CTC 138569
|||
Sbjct 31611 CTC 31613
>seq1669
Length=79912
Score = 89.7 bits (98), Expect = 5e-13
Identities = 78/97 (80%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484
||||||| |||||||||||||| | || || ||| ||||||||||| |||| |||
Sbjct 7442 CCTTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGA 7501
Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521
||||||| ||||||||||| || || || || |||||
Sbjct 7502 TTAGACGTTGTTGGTCCGGTGGGATTCCCTCCTTGTC 7538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496232940623280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |