Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4739 102 8e-17 seq4373 89.7 5e-13 seq1669 89.7 5e-13 >seq4739 Length=56954 Score = 102 bits (112), Expect = 8e-17 Identities = 135/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| ||||||||||| | ||| || |||||| ||||||||||| | Sbjct 20872 GATTCCTTTTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCCTCAAGTTGTTTACCAGCG 20813 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| ||||| ||||||||||| || ||||| || || || ||| | || | |||| Sbjct 20812 AAGATAAGACGTTGTTGGTCCGGTGGAATACCCTCCTTATC-CTGAATCTTCGACTTAAC 20754 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||||| || || ||||||| || | || || ||||||| ||| | Sbjct 20753 GTTG-TCAATGGTGTCGGATGATTCGACCTCGAGAGTAATGGTCTTGCCAGTCAAAGTCT 20695 Query 138599 TTAC 138602 | || Sbjct 20694 TGAC 20691 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||||||||||||||||||||| | ||||| ||||| | ||| ||||| | | Sbjct 21326 CTCCTTTTGAATGTTGTAGTCGCTAAGGGTACGACCATCCTCCAATTGCTTACCAGCGAA 21267 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 || | ||||||||||| || || ||||| || || || ||| || || | | Sbjct 21266 AATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATCTTGGACTTGACATT 21207 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||| | ||||| ||||| | ||| | || || || |||| ||| || || Sbjct 21206 ATCAATTGTGTCCGAAGACTCAACCTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGAC 21147 Query 138603 AAAAATCTGCAT 138614 ||| |||||||| Sbjct 21146 AAAGATCTGCAT 21135 >seq4373 Length=63444 Score = 89.7 bits (98), Expect = 5e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | | ||||||||||| |||||||||||||| Sbjct 31432 CCTCCACGGAGACGGAGCACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCTG 31491 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| |||||||| || |||| |||| | ||||||||||| || || Sbjct 31492 AGGGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGGG 31551 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || ||| | |||| || | ||||| | ||||| || Sbjct 31552 ATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTG-TCGATTGTGTCAGAAGACTCAAC 31610 Query 138567 CTC 138569 ||| Sbjct 31611 CTC 31613 >seq1669 Length=79912 Score = 89.7 bits (98), Expect = 5e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 ||||||| |||||||||||||| | || || ||| ||||||||||| |||| ||| Sbjct 7442 CCTTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGA 7501 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 ||||||| ||||||||||| || || || || ||||| Sbjct 7502 TTAGACGTTGTTGGTCCGGTGGGATTCCCTCCTTGTC 7538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496232940623280