Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 100 2e-16
seq4373 89.7 4e-13
>seq4739
Length=56954
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || || ||||| || ||||| |||||||| ||||| || | | | || ||
Sbjct 21343 ACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCTAAGGGTACGACCATCCTCC 21284
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
||||| || |||||| | ||||| ||||||||||| |||||| || ||||| ||
Sbjct 21283 AATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGG 21224
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| ||| || ||| | || || || || | || || ||||| ||||| || ||
Sbjct 21223 ATCTTGGACTTGACATTATCAATTGTGTCCGAAGACTCAACCTCTAACGTAATTGTCTTG 21164
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
||||||| ||| || ||||| || ||||||
Sbjct 21163 CCTGTCAAAGTCTTGACAAAGATCTGCATA 21134
>seq4373
Length=63444
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||| ||||| || || ||||| |||||||| |||||||| | | ||||||| | |||
Sbjct 31455 ATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCGAGTTG 31514
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
|| || ||| | ||||| ||||||||||| ||| ||||| |||||||| || ||
Sbjct 31515 CTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTT 31574
Query 15093 GCTTTTTACAATTTCTATAGTATC 15116
| ||| ||| | || || || ||
Sbjct 31575 GGATTTGACATTGTCGATTGTGTC 31598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357371314709465
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |