Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq4739 100 2e-16 seq4373 89.7 4e-13 >seq4739 Length=56954 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || ||||| || ||||| |||||||| ||||| || | | | || || Sbjct 21343 ACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCTAAGGGTACGACCATCCTCC 21284 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 ||||| || |||||| | ||||| ||||||||||| |||||| || ||||| || Sbjct 21283 AATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGG 21224 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| | || || || || | || || ||||| ||||| || || Sbjct 21223 ATCTTGGACTTGACATTATCAATTGTGTCCGAAGACTCAACCTCTAACGTAATTGTCTTG 21164 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||| ||| || ||||| || |||||| Sbjct 21163 CCTGTCAAAGTCTTGACAAAGATCTGCATA 21134 >seq4373 Length=63444 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || ||||| |||||||| |||||||| | | ||||||| | ||| Sbjct 31455 ATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCGAGTTG 31514 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | ||||| ||||||||||| ||| ||||| |||||||| || || Sbjct 31515 CTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTT 31574 Query 15093 GCTTTTTACAATTTCTATAGTATC 15116 | ||| ||| | || || || || Sbjct 31575 GGATTTGACATTGTCGATTGTGTC 31598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357371314709465