Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4739 95.1 1e-14 seq4373 86.0 6e-12 >seq4739 Length=56954 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| || | || | || || || |||||||||||||| || || || Sbjct 20908 ATACCACCACGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCC 20849 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | |||||| || ||| | || | ||||| |||||||| Sbjct 20848 GAGAGAGTTCGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGT 20789 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || ||||| |||| | || | | | || | || | ||||||||| || || Sbjct 20788 GGAATACCCTCCTTATCCTGAA-TCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTC 20730 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 ||| |||||||||| || ||||| || | ||| || || Sbjct 20729 GACCTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTGAC 20691 >seq4373 Length=63444 Score = 86.0 bits (94), Expect = 6e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| ||||| | | ||| ||||| || || || ||||||||||| || || ||||| Sbjct 31431 TCCTCCACGGAGACGGAGCACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCT 31490 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || ||| || || | ||| ||||| ||| | ||||| || || ||||| || || Sbjct 31491 GAGGGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGG 31550 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 || || || || || || || || ||||| || | ||||| |||||||| || Sbjct 31551 GATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCGATTGTGTCAGAAGACTCAAC 31610 Query 45293 TTCGAGA 45299 || ||| Sbjct 31611 CTCTAGA 31617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451976367960040