Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 95.1 1e-14
seq4373 86.0 6e-12
>seq4739
Length=56954
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| || | || | || || || |||||||||||||| || || ||
Sbjct 20908 ATACCACCACGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCC 20849
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| ||| || || | |||||| || ||| | || | ||||| ||||||||
Sbjct 20848 GAGAGAGTTCGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGGT 20789
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||| || || ||||| |||| | || | | | || | || | ||||||||| || ||
Sbjct 20788 GGAATACCCTCCTTATCCTGAA-TCTTCGACTTAACGTTGTCAATGGTGTCGGATGATTC 20730
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328
||| |||||||||| || ||||| || | ||| || ||
Sbjct 20729 GACCTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTGAC 20691
>seq4373
Length=63444
Score = 86.0 bits (94), Expect = 6e-12
Identities = 131/187 (70%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172
|||||| ||||| | | ||| ||||| || || || ||||||||||| || || |||||
Sbjct 31431 TCCTCCACGGAGACGGAGCACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCT 31490
Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232
|| ||| || || | ||| ||||| ||| | ||||| || || ||||| || ||
Sbjct 31491 GAGGGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGG 31550
Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292
|| || || || || || || || ||||| || | ||||| |||||||| ||
Sbjct 31551 GATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCGATTGTGTCAGAAGACTCAAC 31610
Query 45293 TTCGAGA 45299
|| |||
Sbjct 31611 CTCTAGA 31617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451976367960040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |